Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00590 and MIT1002_00591 overlap by 4 nucleotides MIT1002_00591 and MIT1002_00592 overlap by 1 nucleotides
MIT1002_00590: MIT1002_00590 - Type I restriction enzyme EcoKI M protein, at 636,546 to 638,126
_00590
MIT1002_00591: MIT1002_00591 - Type I restriction enzyme specificity protein MPN_089, at 638,123 to 639,379
_00591
MIT1002_00592: MIT1002_00592 - hypothetical protein, at 639,379 to 640,584
_00592
Position (kb) 638
639
640 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 637.154 kb on - strand, within MIT1002_00590 at 637.325 kb on - strand, within MIT1002_00590 at 637.325 kb on - strand, within MIT1002_00590 at 637.386 kb on + strand, within MIT1002_00590 at 637.387 kb on + strand, within MIT1002_00590 at 637.394 kb on - strand, within MIT1002_00590 at 637.515 kb on - strand, within MIT1002_00590 at 637.521 kb on + strand, within MIT1002_00590 at 637.521 kb on + strand, within MIT1002_00590 at 637.548 kb on + strand, within MIT1002_00590 at 637.671 kb on - strand, within MIT1002_00590 at 637.774 kb on + strand, within MIT1002_00590 at 637.782 kb on - strand, within MIT1002_00590 at 637.963 kb on + strand, within MIT1002_00590 at 638.008 kb on - strand at 638.015 kb on + strand at 638.099 kb on + strand at 638.099 kb on + strand at 638.099 kb on + strand at 638.155 kb on + strand at 638.160 kb on + strand at 638.168 kb on - strand at 638.169 kb on - strand at 638.169 kb on - strand at 638.224 kb on + strand at 638.341 kb on - strand, within MIT1002_00591 at 638.538 kb on + strand, within MIT1002_00591 at 638.538 kb on + strand, within MIT1002_00591 at 638.538 kb on + strand, within MIT1002_00591 at 638.556 kb on + strand, within MIT1002_00591 at 638.645 kb on - strand, within MIT1002_00591 at 638.702 kb on - strand, within MIT1002_00591 at 638.702 kb on - strand, within MIT1002_00591 at 638.702 kb on - strand, within MIT1002_00591 at 638.755 kb on + strand, within MIT1002_00591 at 638.755 kb on + strand, within MIT1002_00591 at 638.780 kb on + strand, within MIT1002_00591 at 638.882 kb on - strand, within MIT1002_00591 at 638.904 kb on - strand, within MIT1002_00591 at 638.988 kb on - strand, within MIT1002_00591 at 638.988 kb on - strand, within MIT1002_00591 at 639.027 kb on + strand, within MIT1002_00591 at 639.040 kb on - strand, within MIT1002_00591 at 639.062 kb on - strand, within MIT1002_00591 at 639.062 kb on - strand, within MIT1002_00591 at 639.264 kb on + strand at 639.287 kb on + strand at 639.287 kb on + strand at 639.389 kb on - strand at 639.442 kb on + strand at 639.471 kb on - strand at 639.471 kb on - strand at 639.723 kb on + strand, within MIT1002_00592 at 639.765 kb on + strand, within MIT1002_00592 at 639.780 kb on - strand, within MIT1002_00592 at 639.929 kb on - strand, within MIT1002_00592 at 640.060 kb on + strand, within MIT1002_00592 at 640.161 kb on + strand, within MIT1002_00592 at 640.169 kb on - strand, within MIT1002_00592 at 640.169 kb on - strand, within MIT1002_00592 at 640.211 kb on - strand, within MIT1002_00592 at 640.212 kb on + strand, within MIT1002_00592 at 640.240 kb on + strand, within MIT1002_00592 at 640.247 kb on + strand, within MIT1002_00592 at 640.248 kb on - strand, within MIT1002_00592 at 640.255 kb on - strand, within MIT1002_00592 at 640.268 kb on - strand, within MIT1002_00592
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 637,154 - MIT1002_00590 0.38 -0.0 637,325 - MIT1002_00590 0.49 -0.1 637,325 - MIT1002_00590 0.49 +1.3 637,386 + MIT1002_00590 0.53 +1.4 637,387 + MIT1002_00590 0.53 -0.1 637,394 - MIT1002_00590 0.54 +0.0 637,515 - MIT1002_00590 0.61 +0.2 637,521 + MIT1002_00590 0.62 -0.7 637,521 + MIT1002_00590 0.62 -0.7 637,548 + MIT1002_00590 0.63 -0.2 637,671 - MIT1002_00590 0.71 -1.1 637,774 + MIT1002_00590 0.78 +0.0 637,782 - MIT1002_00590 0.78 +0.8 637,963 + MIT1002_00590 0.90 -1.0 638,008 - +0.3 638,015 + +0.0 638,099 + -0.5 638,099 + +1.4 638,099 + -0.2 638,155 + -2.8 638,160 + -1.4 638,168 - -1.5 638,169 - +0.6 638,169 - -0.5 638,224 + +0.5 638,341 - MIT1002_00591 0.17 +0.7 638,538 + MIT1002_00591 0.33 +0.1 638,538 + MIT1002_00591 0.33 -0.1 638,538 + MIT1002_00591 0.33 +0.7 638,556 + MIT1002_00591 0.34 +1.1 638,645 - MIT1002_00591 0.42 +0.1 638,702 - MIT1002_00591 0.46 -1.2 638,702 - MIT1002_00591 0.46 -0.1 638,702 - MIT1002_00591 0.46 -0.2 638,755 + MIT1002_00591 0.50 +0.1 638,755 + MIT1002_00591 0.50 +1.4 638,780 + MIT1002_00591 0.52 +2.0 638,882 - MIT1002_00591 0.60 -3.8 638,904 - MIT1002_00591 0.62 +0.3 638,988 - MIT1002_00591 0.69 -1.8 638,988 - MIT1002_00591 0.69 +0.2 639,027 + MIT1002_00591 0.72 +0.6 639,040 - MIT1002_00591 0.73 +0.3 639,062 - MIT1002_00591 0.75 +0.6 639,062 - MIT1002_00591 0.75 -1.2 639,264 + -0.8 639,287 + -0.5 639,287 + -0.7 639,389 - +0.3 639,442 + +1.0 639,471 - +0.6 639,471 - -1.3 639,723 + MIT1002_00592 0.29 -3.6 639,765 + MIT1002_00592 0.32 -0.9 639,780 - MIT1002_00592 0.33 -2.0 639,929 - MIT1002_00592 0.46 -0.2 640,060 + MIT1002_00592 0.56 +1.3 640,161 + MIT1002_00592 0.65 +0.2 640,169 - MIT1002_00592 0.66 -0.3 640,169 - MIT1002_00592 0.66 +1.4 640,211 - MIT1002_00592 0.69 -0.4 640,212 + MIT1002_00592 0.69 +0.3 640,240 + MIT1002_00592 0.71 -0.2 640,247 + MIT1002_00592 0.72 +0.5 640,248 - MIT1002_00592 0.72 -0.5 640,255 - MIT1002_00592 0.73 -0.1 640,268 - MIT1002_00592 0.74 +0.1
Or see this region's nucleotide sequence