Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00583 and MIT1002_00584 are separated by 342 nucleotides MIT1002_00584 and MIT1002_00585 overlap by 4 nucleotides MIT1002_00585 and MIT1002_00586 are separated by 184 nucleotides
MIT1002_00583: MIT1002_00583 - hypothetical protein, at 630,181 to 631,170
_00583
MIT1002_00584: MIT1002_00584 - hypothetical protein, at 631,513 to 632,106
_00584
MIT1002_00585: MIT1002_00585 - UvsW helicase, at 632,103 to 633,470
_00585
MIT1002_00586: MIT1002_00586 - hypothetical protein, at 633,655 to 634,659
_00586
Position (kb) 632
633
634 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8
9 at 631.103 kb on + strand at 631.137 kb on + strand at 631.346 kb on + strand at 631.375 kb on - strand at 631.432 kb on + strand at 631.450 kb on + strand at 631.456 kb on - strand at 631.494 kb on - strand at 631.690 kb on - strand, within MIT1002_00584 at 631.690 kb on - strand, within MIT1002_00584 at 631.700 kb on - strand, within MIT1002_00584 at 631.752 kb on + strand, within MIT1002_00584 at 631.762 kb on + strand, within MIT1002_00584 at 631.770 kb on - strand, within MIT1002_00584 at 631.803 kb on - strand, within MIT1002_00584 at 631.969 kb on - strand, within MIT1002_00584 at 632.000 kb on + strand, within MIT1002_00584 at 632.008 kb on - strand, within MIT1002_00584 at 632.108 kb on + strand at 632.108 kb on + strand at 632.116 kb on - strand at 632.131 kb on + strand at 632.137 kb on + strand at 632.303 kb on + strand, within MIT1002_00585 at 632.314 kb on + strand, within MIT1002_00585 at 632.322 kb on - strand, within MIT1002_00585 at 632.352 kb on - strand, within MIT1002_00585 at 632.462 kb on + strand, within MIT1002_00585 at 632.462 kb on + strand, within MIT1002_00585 at 632.558 kb on - strand, within MIT1002_00585 at 632.565 kb on + strand, within MIT1002_00585 at 632.565 kb on + strand, within MIT1002_00585 at 632.573 kb on + strand, within MIT1002_00585 at 632.573 kb on - strand, within MIT1002_00585 at 632.583 kb on - strand, within MIT1002_00585 at 632.791 kb on + strand, within MIT1002_00585 at 632.799 kb on - strand, within MIT1002_00585 at 632.799 kb on - strand, within MIT1002_00585 at 632.799 kb on - strand, within MIT1002_00585 at 632.810 kb on + strand, within MIT1002_00585 at 632.824 kb on + strand, within MIT1002_00585 at 632.824 kb on + strand, within MIT1002_00585 at 632.894 kb on + strand, within MIT1002_00585 at 632.905 kb on + strand, within MIT1002_00585 at 632.913 kb on - strand, within MIT1002_00585 at 632.945 kb on - strand, within MIT1002_00585 at 632.955 kb on - strand, within MIT1002_00585 at 633.062 kb on + strand, within MIT1002_00585 at 633.062 kb on + strand, within MIT1002_00585 at 633.062 kb on + strand, within MIT1002_00585 at 633.107 kb on + strand, within MIT1002_00585 at 633.107 kb on + strand, within MIT1002_00585 at 633.115 kb on - strand, within MIT1002_00585 at 633.145 kb on - strand, within MIT1002_00585 at 633.146 kb on + strand, within MIT1002_00585 at 633.147 kb on + strand, within MIT1002_00585 at 633.156 kb on + strand, within MIT1002_00585 at 633.185 kb on + strand, within MIT1002_00585 at 633.185 kb on + strand, within MIT1002_00585 at 633.325 kb on - strand, within MIT1002_00585 at 633.387 kb on + strand at 633.447 kb on - strand at 633.482 kb on - strand at 633.494 kb on - strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.499 kb on + strand at 633.507 kb on - strand at 633.507 kb on - strand at 633.507 kb on - strand at 633.507 kb on - strand at 633.507 kb on - strand at 633.507 kb on - strand at 633.509 kb on + strand at 633.517 kb on - strand at 633.517 kb on - strand at 633.629 kb on - strand at 633.655 kb on - strand at 633.784 kb on + strand, within MIT1002_00586 at 633.793 kb on - strand, within MIT1002_00586 at 633.797 kb on - strand, within MIT1002_00586 at 633.797 kb on - strand, within MIT1002_00586 at 633.872 kb on - strand, within MIT1002_00586 at 633.947 kb on - strand, within MIT1002_00586 at 633.960 kb on - strand, within MIT1002_00586 at 633.960 kb on - strand, within MIT1002_00586 at 633.973 kb on + strand, within MIT1002_00586 at 633.981 kb on - strand, within MIT1002_00586 at 634.007 kb on + strand, within MIT1002_00586 at 634.025 kb on - strand, within MIT1002_00586 at 634.028 kb on + strand, within MIT1002_00586 at 634.031 kb on + strand, within MIT1002_00586 at 634.039 kb on - strand, within MIT1002_00586 at 634.068 kb on - strand, within MIT1002_00586 at 634.096 kb on + strand, within MIT1002_00586 at 634.096 kb on - strand, within MIT1002_00586 at 634.122 kb on + strand, within MIT1002_00586 at 634.125 kb on + strand, within MIT1002_00586 at 634.142 kb on + strand, within MIT1002_00586 at 634.142 kb on + strand, within MIT1002_00586 at 634.142 kb on + strand, within MIT1002_00586 at 634.142 kb on + strand, within MIT1002_00586 at 634.150 kb on - strand, within MIT1002_00586 at 634.150 kb on - strand, within MIT1002_00586 at 634.157 kb on - strand, within MIT1002_00586 at 634.157 kb on - strand, within MIT1002_00586 at 634.166 kb on - strand, within MIT1002_00586 at 634.209 kb on + strand, within MIT1002_00586 at 634.219 kb on + strand, within MIT1002_00586 at 634.219 kb on + strand, within MIT1002_00586 at 634.223 kb on - strand, within MIT1002_00586 at 634.242 kb on + strand, within MIT1002_00586 at 634.242 kb on + strand, within MIT1002_00586 at 634.247 kb on + strand, within MIT1002_00586 at 634.257 kb on + strand, within MIT1002_00586 at 634.257 kb on + strand, within MIT1002_00586 at 634.265 kb on - strand, within MIT1002_00586 at 634.265 kb on - strand, within MIT1002_00586 at 634.265 kb on - strand, within MIT1002_00586 at 634.265 kb on - strand, within MIT1002_00586 at 634.291 kb on + strand, within MIT1002_00586 at 634.307 kb on - strand, within MIT1002_00586 at 634.309 kb on + strand, within MIT1002_00586 at 634.317 kb on - strand, within MIT1002_00586 at 634.326 kb on + strand, within MIT1002_00586 at 634.360 kb on + strand, within MIT1002_00586 at 634.418 kb on + strand, within MIT1002_00586 at 634.418 kb on + strand, within MIT1002_00586 at 634.421 kb on - strand, within MIT1002_00586 at 634.426 kb on - strand, within MIT1002_00586 at 634.444 kb on - strand, within MIT1002_00586
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 631,103 + +0.5 631,137 + +0.3 631,346 + +1.0 631,375 - +0.2 631,432 + +0.7 631,450 + +0.6 631,456 - -0.3 631,494 - +0.6 631,690 - MIT1002_00584 0.30 +1.3 631,690 - MIT1002_00584 0.30 -0.6 631,700 - MIT1002_00584 0.31 +0.1 631,752 + MIT1002_00584 0.40 +0.6 631,762 + MIT1002_00584 0.42 -0.7 631,770 - MIT1002_00584 0.43 -0.5 631,803 - MIT1002_00584 0.49 -0.4 631,969 - MIT1002_00584 0.77 -1.3 632,000 + MIT1002_00584 0.82 -0.1 632,008 - MIT1002_00584 0.83 -1.3 632,108 + +1.4 632,108 + -0.3 632,116 - +0.6 632,131 + -0.7 632,137 + -0.3 632,303 + MIT1002_00585 0.15 +1.2 632,314 + MIT1002_00585 0.15 -0.5 632,322 - MIT1002_00585 0.16 -1.1 632,352 - MIT1002_00585 0.18 +0.8 632,462 + MIT1002_00585 0.26 +1.2 632,462 + MIT1002_00585 0.26 +1.1 632,558 - MIT1002_00585 0.33 +0.5 632,565 + MIT1002_00585 0.34 +0.8 632,565 + MIT1002_00585 0.34 +1.5 632,573 + MIT1002_00585 0.34 -0.2 632,573 - MIT1002_00585 0.34 +2.9 632,583 - MIT1002_00585 0.35 +0.8 632,791 + MIT1002_00585 0.50 +0.8 632,799 - MIT1002_00585 0.51 +1.5 632,799 - MIT1002_00585 0.51 +0.7 632,799 - MIT1002_00585 0.51 -0.6 632,810 + MIT1002_00585 0.52 +1.6 632,824 + MIT1002_00585 0.53 +0.4 632,824 + MIT1002_00585 0.53 +9.0 632,894 + MIT1002_00585 0.58 -0.8 632,905 + MIT1002_00585 0.59 +0.5 632,913 - MIT1002_00585 0.59 -1.5 632,945 - MIT1002_00585 0.62 -1.4 632,955 - MIT1002_00585 0.62 -0.5 633,062 + MIT1002_00585 0.70 +0.1 633,062 + MIT1002_00585 0.70 +0.3 633,062 + MIT1002_00585 0.70 -0.8 633,107 + MIT1002_00585 0.73 +1.2 633,107 + MIT1002_00585 0.73 -0.4 633,115 - MIT1002_00585 0.74 -0.3 633,145 - MIT1002_00585 0.76 +0.7 633,146 + MIT1002_00585 0.76 +0.6 633,147 + MIT1002_00585 0.76 -1.2 633,156 + MIT1002_00585 0.77 +0.9 633,185 + MIT1002_00585 0.79 +2.9 633,185 + MIT1002_00585 0.79 +1.1 633,325 - MIT1002_00585 0.89 +0.2 633,387 + -0.0 633,447 - +0.2 633,482 - -0.3 633,494 - -0.2 633,499 + -0.3 633,499 + +0.4 633,499 + -0.8 633,499 + +0.6 633,499 + +0.2 633,499 + +0.2 633,499 + +0.8 633,499 + +0.2 633,507 - -0.4 633,507 - -0.3 633,507 - -0.2 633,507 - -2.9 633,507 - -0.8 633,507 - +0.9 633,509 + -1.8 633,517 - -0.7 633,517 - +1.1 633,629 - -0.1 633,655 - -1.2 633,784 + MIT1002_00586 0.13 -0.2 633,793 - MIT1002_00586 0.14 +1.3 633,797 - MIT1002_00586 0.14 +1.2 633,797 - MIT1002_00586 0.14 +0.6 633,872 - MIT1002_00586 0.22 -0.9 633,947 - MIT1002_00586 0.29 +0.4 633,960 - MIT1002_00586 0.30 -0.5 633,960 - MIT1002_00586 0.30 +1.2 633,973 + MIT1002_00586 0.32 -0.9 633,981 - MIT1002_00586 0.32 -1.0 634,007 + MIT1002_00586 0.35 +0.3 634,025 - MIT1002_00586 0.37 -0.3 634,028 + MIT1002_00586 0.37 -0.1 634,031 + MIT1002_00586 0.37 +0.5 634,039 - MIT1002_00586 0.38 +0.3 634,068 - MIT1002_00586 0.41 +0.0 634,096 + MIT1002_00586 0.44 -1.1 634,096 - MIT1002_00586 0.44 -1.3 634,122 + MIT1002_00586 0.46 -0.2 634,125 + MIT1002_00586 0.47 -0.8 634,142 + MIT1002_00586 0.48 +0.4 634,142 + MIT1002_00586 0.48 +0.3 634,142 + MIT1002_00586 0.48 -0.8 634,142 + MIT1002_00586 0.48 -2.1 634,150 - MIT1002_00586 0.49 +0.3 634,150 - MIT1002_00586 0.49 +0.5 634,157 - MIT1002_00586 0.50 +0.3 634,157 - MIT1002_00586 0.50 -0.8 634,166 - MIT1002_00586 0.51 +0.4 634,209 + MIT1002_00586 0.55 -0.7 634,219 + MIT1002_00586 0.56 -0.0 634,219 + MIT1002_00586 0.56 +2.0 634,223 - MIT1002_00586 0.57 +1.2 634,242 + MIT1002_00586 0.58 -1.8 634,242 + MIT1002_00586 0.58 -0.6 634,247 + MIT1002_00586 0.59 -0.4 634,257 + MIT1002_00586 0.60 +0.2 634,257 + MIT1002_00586 0.60 +0.6 634,265 - MIT1002_00586 0.61 +0.2 634,265 - MIT1002_00586 0.61 +0.4 634,265 - MIT1002_00586 0.61 -1.6 634,265 - MIT1002_00586 0.61 +0.8 634,291 + MIT1002_00586 0.63 +0.2 634,307 - MIT1002_00586 0.65 +0.1 634,309 + MIT1002_00586 0.65 -0.4 634,317 - MIT1002_00586 0.66 -0.2 634,326 + MIT1002_00586 0.67 -0.8 634,360 + MIT1002_00586 0.70 -0.9 634,418 + MIT1002_00586 0.76 +0.2 634,418 + MIT1002_00586 0.76 +2.0 634,421 - MIT1002_00586 0.76 -0.2 634,426 - MIT1002_00586 0.77 +0.6 634,444 - MIT1002_00586 0.79 +0.0
Or see this region's nucleotide sequence