Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00514

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00513 and MIT1002_00514 are separated by 172 nucleotidesMIT1002_00514 and MIT1002_00515 are separated by 33 nucleotides MIT1002_00513: MIT1002_00513 - hypothetical protein, at 556,097 to 557,425 _00513 MIT1002_00514: MIT1002_00514 - Guanosine-5'-triphosphate,3'-diphosphate pyrophosphatase, at 557,598 to 559,109 _00514 MIT1002_00515: MIT1002_00515 - ATP-dependent RNA helicase RhlB, at 559,143 to 560,435 _00515 Position (kb) 557 558 559 560Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 557.514 kb on + strandat 557.528 kb on - strandat 557.664 kb on + strandat 557.778 kb on - strand, within MIT1002_00514at 557.904 kb on - strand, within MIT1002_00514at 557.910 kb on - strand, within MIT1002_00514at 557.946 kb on + strand, within MIT1002_00514at 558.086 kb on + strand, within MIT1002_00514at 558.143 kb on + strand, within MIT1002_00514at 558.151 kb on - strand, within MIT1002_00514at 558.151 kb on - strand, within MIT1002_00514at 558.151 kb on - strand, within MIT1002_00514at 558.151 kb on - strand, within MIT1002_00514at 558.358 kb on - strand, within MIT1002_00514at 558.403 kb on + strand, within MIT1002_00514at 558.403 kb on + strand, within MIT1002_00514at 558.403 kb on + strand, within MIT1002_00514at 558.411 kb on - strand, within MIT1002_00514at 558.411 kb on - strand, within MIT1002_00514at 558.435 kb on + strand, within MIT1002_00514at 558.435 kb on + strand, within MIT1002_00514at 558.508 kb on - strand, within MIT1002_00514at 558.605 kb on - strand, within MIT1002_00514at 558.692 kb on - strand, within MIT1002_00514at 558.705 kb on + strand, within MIT1002_00514at 558.806 kb on - strand, within MIT1002_00514at 558.868 kb on - strand, within MIT1002_00514at 558.870 kb on - strand, within MIT1002_00514at 558.910 kb on + strand, within MIT1002_00514at 558.953 kb on - strand, within MIT1002_00514at 559.002 kb on + strandat 559.002 kb on + strandat 559.010 kb on - strandat 559.077 kb on + strandat 559.096 kb on + strandat 559.097 kb on - strandat 559.097 kb on - strandat 559.106 kb on + strandat 559.114 kb on - strandat 559.142 kb on - strandat 559.142 kb on - strandat 559.146 kb on + strandat 559.149 kb on - strandat 559.156 kb on + strandat 559.156 kb on + strandat 559.161 kb on - strandat 559.276 kb on + strand, within MIT1002_00515at 559.319 kb on + strand, within MIT1002_00515at 559.327 kb on - strand, within MIT1002_00515at 559.328 kb on - strand, within MIT1002_00515at 559.385 kb on - strand, within MIT1002_00515at 559.385 kb on - strand, within MIT1002_00515at 559.385 kb on - strand, within MIT1002_00515at 559.470 kb on + strand, within MIT1002_00515at 559.535 kb on - strand, within MIT1002_00515at 559.586 kb on - strand, within MIT1002_00515at 559.678 kb on + strand, within MIT1002_00515at 559.678 kb on + strand, within MIT1002_00515at 559.686 kb on - strand, within MIT1002_00515at 559.776 kb on - strand, within MIT1002_00515at 559.782 kb on - strand, within MIT1002_00515at 559.782 kb on - strand, within MIT1002_00515at 559.782 kb on - strand, within MIT1002_00515at 559.784 kb on + strand, within MIT1002_00515at 559.792 kb on - strand, within MIT1002_00515at 559.811 kb on - strand, within MIT1002_00515at 559.829 kb on + strand, within MIT1002_00515at 559.837 kb on - strand, within MIT1002_00515at 559.843 kb on - strand, within MIT1002_00515at 559.862 kb on - strand, within MIT1002_00515at 559.955 kb on + strand, within MIT1002_00515at 560.068 kb on + strand, within MIT1002_00515at 560.069 kb on + strand, within MIT1002_00515at 560.069 kb on - strand, within MIT1002_00515at 560.101 kb on + strand, within MIT1002_00515

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
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557,514 + +0.2
557,528 - -0.9
557,664 + -1.0
557,778 - MIT1002_00514 0.12 +0.3
557,904 - MIT1002_00514 0.20 -2.3
557,910 - MIT1002_00514 0.21 -1.5
557,946 + MIT1002_00514 0.23 -1.6
558,086 + MIT1002_00514 0.32 -2.0
558,143 + MIT1002_00514 0.36 +0.4
558,151 - MIT1002_00514 0.37 +0.1
558,151 - MIT1002_00514 0.37 -0.9
558,151 - MIT1002_00514 0.37 -0.7
558,151 - MIT1002_00514 0.37 -0.1
558,358 - MIT1002_00514 0.50 +0.3
558,403 + MIT1002_00514 0.53 -3.1
558,403 + MIT1002_00514 0.53 -1.0
558,403 + MIT1002_00514 0.53 -2.3
558,411 - MIT1002_00514 0.54 -3.4
558,411 - MIT1002_00514 0.54 -1.1
558,435 + MIT1002_00514 0.55 -0.7
558,435 + MIT1002_00514 0.55 -1.0
558,508 - MIT1002_00514 0.60 -1.4
558,605 - MIT1002_00514 0.67 -0.3
558,692 - MIT1002_00514 0.72 -0.9
558,705 + MIT1002_00514 0.73 -1.2
558,806 - MIT1002_00514 0.80 +0.1
558,868 - MIT1002_00514 0.84 +1.1
558,870 - MIT1002_00514 0.84 -1.0
558,910 + MIT1002_00514 0.87 -0.5
558,953 - MIT1002_00514 0.90 -1.2
559,002 + -3.1
559,002 + -2.7
559,010 - -1.7
559,077 + -1.0
559,096 + +0.7
559,097 - -0.1
559,097 - -2.4
559,106 + -0.5
559,114 - -1.7
559,142 - -1.5
559,142 - +1.2
559,146 + -2.0
559,149 - +1.6
559,156 + +2.1
559,156 + -0.9
559,161 - +0.7
559,276 + MIT1002_00515 0.10 -0.7
559,319 + MIT1002_00515 0.14 -0.9
559,327 - MIT1002_00515 0.14 -1.6
559,328 - MIT1002_00515 0.14 -0.7
559,385 - MIT1002_00515 0.19 -0.9
559,385 - MIT1002_00515 0.19 +1.2
559,385 - MIT1002_00515 0.19 +0.1
559,470 + MIT1002_00515 0.25 -2.7
559,535 - MIT1002_00515 0.30 -0.8
559,586 - MIT1002_00515 0.34 -2.3
559,678 + MIT1002_00515 0.41 +0.0
559,678 + MIT1002_00515 0.41 +0.4
559,686 - MIT1002_00515 0.42 +1.5
559,776 - MIT1002_00515 0.49 +0.8
559,782 - MIT1002_00515 0.49 -1.8
559,782 - MIT1002_00515 0.49 -0.3
559,782 - MIT1002_00515 0.49 +3.1
559,784 + MIT1002_00515 0.50 -0.3
559,792 - MIT1002_00515 0.50 -0.8
559,811 - MIT1002_00515 0.52 +0.3
559,829 + MIT1002_00515 0.53 -0.3
559,837 - MIT1002_00515 0.54 -0.3
559,843 - MIT1002_00515 0.54 -0.5
559,862 - MIT1002_00515 0.56 -2.1
559,955 + MIT1002_00515 0.63 -1.6
560,068 + MIT1002_00515 0.72 -1.6
560,069 + MIT1002_00515 0.72 -0.3
560,069 - MIT1002_00515 0.72 -0.0
560,101 + MIT1002_00515 0.74 +1.2

Or see this region's nucleotide sequence