Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00503 and MIT1002_00504 overlap by 1 nucleotides MIT1002_00504 and MIT1002_00505 are separated by 80 nucleotides MIT1002_00505 and MIT1002_00506 are separated by 183 nucleotides MIT1002_00506 and MIT1002_00507 overlap by 1 nucleotides MIT1002_00507 and MIT1002_00508 are separated by 0 nucleotides
MIT1002_00503: MIT1002_00503 - Acetolactate synthase isozyme 3 large subunit, at 546,944 to 548,662
_00503
MIT1002_00504: MIT1002_00504 - Acetolactate synthase isozyme 3 small subunit, at 548,662 to 549,159
_00504
MIT1002_00505: MIT1002_00505 - hypothetical protein, at 549,240 to 550,301
_00505
MIT1002_00506: MIT1002_00506 - Sec-independent protein translocase protein TatA, at 550,485 to 550,724
_00506
MIT1002_00507: MIT1002_00507 - Sec-independent protein translocase protein TatB, at 550,724 to 551,023
_00507
MIT1002_00508: MIT1002_00508 - Sec-independent protein translocase protein TatC, at 551,024 to 551,779
_00508
Position (kb) 549
550
551 Strain fitness (log2 ratio) -9
-8
-7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 548.258 kb on + strand, within MIT1002_00503 at 548.258 kb on + strand, within MIT1002_00503 at 548.258 kb on + strand, within MIT1002_00503 at 548.258 kb on + strand, within MIT1002_00503 at 548.258 kb on + strand, within MIT1002_00503 at 548.266 kb on - strand, within MIT1002_00503 at 548.266 kb on - strand, within MIT1002_00503 at 548.266 kb on - strand, within MIT1002_00503 at 548.266 kb on - strand, within MIT1002_00503 at 548.266 kb on - strand, within MIT1002_00503 at 548.290 kb on - strand, within MIT1002_00503 at 548.317 kb on + strand, within MIT1002_00503 at 548.325 kb on - strand, within MIT1002_00503 at 548.422 kb on + strand, within MIT1002_00503 at 548.428 kb on - strand, within MIT1002_00503 at 548.480 kb on + strand, within MIT1002_00503 at 548.480 kb on + strand, within MIT1002_00503 at 548.530 kb on - strand at 548.569 kb on + strand at 548.601 kb on - strand at 548.601 kb on - strand at 548.651 kb on + strand at 548.707 kb on + strand at 548.717 kb on - strand, within MIT1002_00504 at 548.770 kb on - strand, within MIT1002_00504 at 548.859 kb on + strand, within MIT1002_00504 at 548.859 kb on + strand, within MIT1002_00504 at 548.867 kb on - strand, within MIT1002_00504 at 548.933 kb on - strand, within MIT1002_00504 at 549.018 kb on + strand, within MIT1002_00504 at 549.074 kb on + strand, within MIT1002_00504 at 549.082 kb on - strand, within MIT1002_00504 at 549.120 kb on + strand at 549.143 kb on - strand at 549.269 kb on - strand at 549.275 kb on + strand at 549.275 kb on + strand at 549.275 kb on + strand at 549.275 kb on + strand at 549.275 kb on + strand at 549.275 kb on + strand at 549.283 kb on - strand at 549.283 kb on - strand at 549.283 kb on - strand at 549.283 kb on - strand at 549.367 kb on - strand, within MIT1002_00505 at 549.367 kb on - strand, within MIT1002_00505 at 549.382 kb on - strand, within MIT1002_00505 at 549.382 kb on - strand, within MIT1002_00505 at 549.382 kb on - strand, within MIT1002_00505 at 549.416 kb on + strand, within MIT1002_00505 at 549.451 kb on + strand, within MIT1002_00505 at 549.494 kb on + strand, within MIT1002_00505 at 549.494 kb on + strand, within MIT1002_00505 at 549.502 kb on - strand, within MIT1002_00505 at 549.613 kb on - strand, within MIT1002_00505 at 549.639 kb on - strand, within MIT1002_00505 at 549.644 kb on - strand, within MIT1002_00505 at 549.663 kb on + strand, within MIT1002_00505 at 549.691 kb on + strand, within MIT1002_00505 at 549.741 kb on + strand, within MIT1002_00505 at 549.820 kb on + strand, within MIT1002_00505 at 549.820 kb on + strand, within MIT1002_00505 at 549.820 kb on + strand, within MIT1002_00505 at 549.833 kb on - strand, within MIT1002_00505 at 549.833 kb on - strand, within MIT1002_00505 at 549.893 kb on + strand, within MIT1002_00505 at 549.893 kb on + strand, within MIT1002_00505 at 549.893 kb on + strand, within MIT1002_00505 at 549.893 kb on + strand, within MIT1002_00505 at 549.893 kb on + strand, within MIT1002_00505 at 549.895 kb on - strand, within MIT1002_00505 at 549.901 kb on - strand, within MIT1002_00505 at 549.901 kb on - strand, within MIT1002_00505 at 549.901 kb on - strand, within MIT1002_00505 at 549.941 kb on + strand, within MIT1002_00505 at 549.963 kb on + strand, within MIT1002_00505 at 549.971 kb on - strand, within MIT1002_00505 at 549.994 kb on - strand, within MIT1002_00505 at 549.994 kb on - strand, within MIT1002_00505 at 549.994 kb on - strand, within MIT1002_00505 at 550.042 kb on - strand, within MIT1002_00505 at 550.042 kb on - strand, within MIT1002_00505 at 550.042 kb on - strand, within MIT1002_00505 at 550.046 kb on + strand, within MIT1002_00505 at 550.046 kb on + strand, within MIT1002_00505 at 550.108 kb on - strand, within MIT1002_00505 at 550.111 kb on + strand, within MIT1002_00505 at 550.111 kb on + strand, within MIT1002_00505 at 550.111 kb on + strand, within MIT1002_00505 at 550.119 kb on - strand, within MIT1002_00505 at 550.119 kb on - strand, within MIT1002_00505 at 550.119 kb on - strand, within MIT1002_00505 at 550.158 kb on + strand, within MIT1002_00505 at 550.193 kb on + strand, within MIT1002_00505 at 550.193 kb on + strand, within MIT1002_00505 at 550.193 kb on + strand, within MIT1002_00505 at 550.201 kb on - strand at 550.201 kb on - strand at 550.201 kb on - strand at 550.201 kb on - strand at 550.201 kb on - strand at 550.201 kb on - strand at 550.227 kb on - strand at 550.253 kb on + strand at 550.293 kb on + strand at 550.293 kb on + strand at 550.359 kb on + strand at 550.361 kb on + strand at 550.445 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 548,258 + MIT1002_00503 0.76 -2.2 548,258 + MIT1002_00503 0.76 -4.0 548,258 + MIT1002_00503 0.76 -2.9 548,258 + MIT1002_00503 0.76 -2.5 548,258 + MIT1002_00503 0.76 +0.1 548,266 - MIT1002_00503 0.77 -2.2 548,266 - MIT1002_00503 0.77 -1.7 548,266 - MIT1002_00503 0.77 -0.3 548,266 - MIT1002_00503 0.77 -0.5 548,266 - MIT1002_00503 0.77 -3.1 548,290 - MIT1002_00503 0.78 -2.1 548,317 + MIT1002_00503 0.80 -4.0 548,325 - MIT1002_00503 0.80 -1.6 548,422 + MIT1002_00503 0.86 -4.8 548,428 - MIT1002_00503 0.86 -3.9 548,480 + MIT1002_00503 0.89 -6.1 548,480 + MIT1002_00503 0.89 -3.3 548,530 - -3.5 548,569 + -3.7 548,601 - -4.3 548,601 - -6.3 548,651 + -4.3 548,707 + -5.3 548,717 - MIT1002_00504 0.11 -9.3 548,770 - MIT1002_00504 0.22 -4.1 548,859 + MIT1002_00504 0.40 -2.8 548,859 + MIT1002_00504 0.40 -5.0 548,867 - MIT1002_00504 0.41 -2.0 548,933 - MIT1002_00504 0.54 -3.5 549,018 + MIT1002_00504 0.71 -3.6 549,074 + MIT1002_00504 0.83 -1.5 549,082 - MIT1002_00504 0.84 -3.4 549,120 + -0.3 549,143 - -2.9 549,269 - +0.7 549,275 + +0.2 549,275 + +0.3 549,275 + +0.1 549,275 + -0.3 549,275 + +0.4 549,275 + +0.5 549,283 - -0.2 549,283 - -2.4 549,283 - -1.4 549,283 - +3.3 549,367 - MIT1002_00505 0.12 +0.2 549,367 - MIT1002_00505 0.12 +1.1 549,382 - MIT1002_00505 0.13 -2.2 549,382 - MIT1002_00505 0.13 -0.5 549,382 - MIT1002_00505 0.13 +0.2 549,416 + MIT1002_00505 0.17 -0.8 549,451 + MIT1002_00505 0.20 -0.1 549,494 + MIT1002_00505 0.24 -1.7 549,494 + MIT1002_00505 0.24 -0.1 549,502 - MIT1002_00505 0.25 -2.3 549,613 - MIT1002_00505 0.35 +0.8 549,639 - MIT1002_00505 0.38 +0.2 549,644 - MIT1002_00505 0.38 -0.2 549,663 + MIT1002_00505 0.40 +0.7 549,691 + MIT1002_00505 0.42 -0.8 549,741 + MIT1002_00505 0.47 -0.9 549,820 + MIT1002_00505 0.55 -0.3 549,820 + MIT1002_00505 0.55 -1.2 549,820 + MIT1002_00505 0.55 -0.5 549,833 - MIT1002_00505 0.56 -0.2 549,833 - MIT1002_00505 0.56 +1.5 549,893 + MIT1002_00505 0.61 -0.2 549,893 + MIT1002_00505 0.61 +0.4 549,893 + MIT1002_00505 0.61 -2.4 549,893 + MIT1002_00505 0.61 -2.9 549,893 + MIT1002_00505 0.61 -0.8 549,895 - MIT1002_00505 0.62 +0.9 549,901 - MIT1002_00505 0.62 +0.0 549,901 - MIT1002_00505 0.62 -0.6 549,901 - MIT1002_00505 0.62 +0.6 549,941 + MIT1002_00505 0.66 -1.5 549,963 + MIT1002_00505 0.68 +0.6 549,971 - MIT1002_00505 0.69 +1.3 549,994 - MIT1002_00505 0.71 -0.2 549,994 - MIT1002_00505 0.71 -1.3 549,994 - MIT1002_00505 0.71 -0.3 550,042 - MIT1002_00505 0.76 -0.5 550,042 - MIT1002_00505 0.76 -0.1 550,042 - MIT1002_00505 0.76 -1.5 550,046 + MIT1002_00505 0.76 -0.4 550,046 + MIT1002_00505 0.76 +0.9 550,108 - MIT1002_00505 0.82 +1.6 550,111 + MIT1002_00505 0.82 +0.4 550,111 + MIT1002_00505 0.82 +0.1 550,111 + MIT1002_00505 0.82 +0.5 550,119 - MIT1002_00505 0.83 -1.0 550,119 - MIT1002_00505 0.83 -1.0 550,119 - MIT1002_00505 0.83 +0.3 550,158 + MIT1002_00505 0.86 -2.4 550,193 + MIT1002_00505 0.90 -3.6 550,193 + MIT1002_00505 0.90 -0.5 550,193 + MIT1002_00505 0.90 -0.5 550,201 - -1.0 550,201 - -0.4 550,201 - -0.9 550,201 - +0.6 550,201 - -1.5 550,201 - +0.1 550,227 - +0.1 550,253 + -0.1 550,293 + -0.6 550,293 + -0.8 550,359 + +2.5 550,361 + -0.8 550,445 + +0.9
Or see this region's nucleotide sequence