Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00496 and MIT1002_00497 are separated by 101 nucleotides MIT1002_00497 and MIT1002_00498 are separated by 53 nucleotides MIT1002_00498 and MIT1002_00499 are separated by 613 nucleotides MIT1002_00499 and MIT1002_00500 are separated by 93 nucleotides
MIT1002_00496: MIT1002_00496 - Oligoribonuclease, at 539,852 to 540,397
_00496
MIT1002_00497: MIT1002_00497 - tRNA-Gly, at 540,499 to 540,574
_00497
MIT1002_00498: MIT1002_00498 - tRNA-Gly, at 540,628 to 540,703
_00498
MIT1002_00499: MIT1002_00499 - Colicin I receptor precursor, at 541,317 to 543,788
_00499
MIT1002_00500: MIT1002_00500 - putative PEP-CTERM system TPR-repeat lipoprotein, at 543,882 to 545,450
_00500
Position (kb) 541
542
543
544 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 540.657 kb on - strand, within MIT1002_00498 at 540.658 kb on - strand, within MIT1002_00498 at 540.757 kb on + strand at 540.763 kb on - strand at 540.763 kb on - strand at 540.765 kb on + strand at 540.772 kb on + strand at 541.138 kb on + strand at 541.138 kb on + strand at 541.145 kb on + strand at 541.146 kb on - strand at 541.162 kb on - strand at 541.284 kb on - strand at 541.353 kb on + strand at 541.373 kb on - strand at 541.497 kb on + strand at 541.497 kb on + strand at 541.504 kb on + strand at 541.504 kb on + strand at 541.505 kb on - strand at 541.512 kb on - strand at 541.513 kb on + strand at 541.581 kb on + strand, within MIT1002_00499 at 541.581 kb on + strand, within MIT1002_00499 at 541.589 kb on - strand, within MIT1002_00499 at 541.656 kb on - strand, within MIT1002_00499 at 541.716 kb on - strand, within MIT1002_00499 at 541.734 kb on + strand, within MIT1002_00499 at 541.759 kb on - strand, within MIT1002_00499 at 541.773 kb on + strand, within MIT1002_00499 at 541.783 kb on + strand, within MIT1002_00499 at 541.791 kb on - strand, within MIT1002_00499 at 541.791 kb on - strand, within MIT1002_00499 at 541.848 kb on - strand, within MIT1002_00499 at 541.850 kb on + strand, within MIT1002_00499 at 541.853 kb on - strand, within MIT1002_00499 at 541.855 kb on + strand, within MIT1002_00499 at 541.863 kb on - strand, within MIT1002_00499 at 541.863 kb on - strand, within MIT1002_00499 at 541.863 kb on - strand, within MIT1002_00499 at 541.863 kb on - strand, within MIT1002_00499 at 541.863 kb on - strand, within MIT1002_00499 at 541.863 kb on - strand, within MIT1002_00499 at 541.863 kb on - strand, within MIT1002_00499 at 541.891 kb on + strand, within MIT1002_00499 at 541.903 kb on + strand, within MIT1002_00499 at 542.002 kb on + strand, within MIT1002_00499 at 542.002 kb on + strand, within MIT1002_00499 at 542.010 kb on - strand, within MIT1002_00499 at 542.010 kb on - strand, within MIT1002_00499 at 542.012 kb on + strand, within MIT1002_00499 at 542.014 kb on - strand, within MIT1002_00499 at 542.024 kb on - strand, within MIT1002_00499 at 542.034 kb on - strand, within MIT1002_00499 at 542.034 kb on - strand, within MIT1002_00499 at 542.086 kb on - strand, within MIT1002_00499 at 542.089 kb on + strand, within MIT1002_00499 at 542.121 kb on + strand, within MIT1002_00499 at 542.134 kb on - strand, within MIT1002_00499 at 542.243 kb on + strand, within MIT1002_00499 at 542.253 kb on + strand, within MIT1002_00499 at 542.263 kb on + strand, within MIT1002_00499 at 542.292 kb on + strand, within MIT1002_00499 at 542.307 kb on - strand, within MIT1002_00499 at 542.307 kb on - strand, within MIT1002_00499 at 542.307 kb on - strand, within MIT1002_00499 at 542.307 kb on - strand, within MIT1002_00499 at 542.311 kb on + strand, within MIT1002_00499 at 542.311 kb on + strand, within MIT1002_00499 at 542.311 kb on + strand, within MIT1002_00499 at 542.316 kb on + strand, within MIT1002_00499 at 542.316 kb on + strand, within MIT1002_00499 at 542.316 kb on + strand, within MIT1002_00499 at 542.319 kb on - strand, within MIT1002_00499 at 542.324 kb on - strand, within MIT1002_00499 at 542.324 kb on - strand, within MIT1002_00499 at 542.331 kb on + strand, within MIT1002_00499 at 542.380 kb on - strand, within MIT1002_00499 at 542.409 kb on + strand, within MIT1002_00499 at 542.411 kb on + strand, within MIT1002_00499 at 542.472 kb on - strand, within MIT1002_00499 at 542.615 kb on - strand, within MIT1002_00499 at 542.617 kb on - strand, within MIT1002_00499 at 542.654 kb on - strand, within MIT1002_00499 at 542.693 kb on + strand, within MIT1002_00499 at 542.693 kb on + strand, within MIT1002_00499 at 542.740 kb on - strand, within MIT1002_00499 at 542.742 kb on + strand, within MIT1002_00499 at 542.776 kb on - strand, within MIT1002_00499 at 542.798 kb on + strand, within MIT1002_00499 at 542.798 kb on + strand, within MIT1002_00499 at 542.806 kb on - strand, within MIT1002_00499 at 542.806 kb on - strand, within MIT1002_00499 at 542.806 kb on - strand, within MIT1002_00499 at 542.855 kb on + strand, within MIT1002_00499 at 542.855 kb on + strand, within MIT1002_00499 at 542.870 kb on - strand, within MIT1002_00499 at 542.923 kb on - strand, within MIT1002_00499 at 542.947 kb on - strand, within MIT1002_00499 at 542.956 kb on - strand, within MIT1002_00499 at 543.017 kb on + strand, within MIT1002_00499 at 543.018 kb on - strand, within MIT1002_00499 at 543.113 kb on + strand, within MIT1002_00499 at 543.113 kb on + strand, within MIT1002_00499 at 543.121 kb on - strand, within MIT1002_00499 at 543.128 kb on + strand, within MIT1002_00499 at 543.128 kb on + strand, within MIT1002_00499 at 543.128 kb on + strand, within MIT1002_00499 at 543.128 kb on + strand, within MIT1002_00499 at 543.128 kb on + strand, within MIT1002_00499 at 543.136 kb on - strand, within MIT1002_00499 at 543.136 kb on - strand, within MIT1002_00499 at 543.136 kb on - strand, within MIT1002_00499 at 543.142 kb on + strand, within MIT1002_00499 at 543.156 kb on - strand, within MIT1002_00499 at 543.215 kb on + strand, within MIT1002_00499 at 543.216 kb on - strand, within MIT1002_00499 at 543.223 kb on - strand, within MIT1002_00499 at 543.291 kb on - strand, within MIT1002_00499 at 543.349 kb on - strand, within MIT1002_00499 at 543.354 kb on - strand, within MIT1002_00499 at 543.362 kb on - strand, within MIT1002_00499 at 543.372 kb on + strand, within MIT1002_00499 at 543.408 kb on + strand, within MIT1002_00499 at 543.426 kb on + strand, within MIT1002_00499 at 543.434 kb on - strand, within MIT1002_00499 at 543.498 kb on + strand, within MIT1002_00499 at 543.506 kb on - strand, within MIT1002_00499 at 543.506 kb on - strand, within MIT1002_00499 at 543.516 kb on - strand, within MIT1002_00499 at 543.537 kb on + strand, within MIT1002_00499 at 543.637 kb on + strand at 543.646 kb on + strand at 543.667 kb on + strand at 543.667 kb on + strand at 543.696 kb on - strand at 543.735 kb on + strand at 543.735 kb on + strand at 543.759 kb on - strand at 543.759 kb on - strand at 543.793 kb on - strand at 543.793 kb on - strand at 543.900 kb on + strand at 543.961 kb on + strand at 543.969 kb on - strand at 543.969 kb on - strand at 544.070 kb on + strand, within MIT1002_00500 at 544.149 kb on + strand, within MIT1002_00500 at 544.149 kb on + strand, within MIT1002_00500 at 544.149 kb on + strand, within MIT1002_00500 at 544.149 kb on + strand, within MIT1002_00500 at 544.149 kb on + strand, within MIT1002_00500 at 544.149 kb on + strand, within MIT1002_00500 at 544.157 kb on - strand, within MIT1002_00500 at 544.157 kb on - strand, within MIT1002_00500 at 544.157 kb on - strand, within MIT1002_00500 at 544.157 kb on - strand, within MIT1002_00500 at 544.157 kb on - strand, within MIT1002_00500 at 544.157 kb on - strand, within MIT1002_00500 at 544.157 kb on - strand, within MIT1002_00500 at 544.157 kb on - strand, within MIT1002_00500 at 544.190 kb on - strand, within MIT1002_00500 at 544.269 kb on - strand, within MIT1002_00500 at 544.312 kb on + strand, within MIT1002_00500 at 544.374 kb on + strand, within MIT1002_00500 at 544.374 kb on + strand, within MIT1002_00500 at 544.382 kb on - strand, within MIT1002_00500 at 544.463 kb on + strand, within MIT1002_00500 at 544.463 kb on + strand, within MIT1002_00500 at 544.463 kb on + strand, within MIT1002_00500 at 544.463 kb on + strand, within MIT1002_00500 at 544.463 kb on + strand, within MIT1002_00500 at 544.463 kb on + strand, within MIT1002_00500 at 544.463 kb on + strand, within MIT1002_00500 at 544.463 kb on + strand, within MIT1002_00500 at 544.471 kb on - strand, within MIT1002_00500 at 544.471 kb on - strand, within MIT1002_00500 at 544.471 kb on - strand, within MIT1002_00500 at 544.498 kb on - strand, within MIT1002_00500 at 544.508 kb on + strand, within MIT1002_00500 at 544.516 kb on - strand, within MIT1002_00500 at 544.519 kb on + strand, within MIT1002_00500 at 544.526 kb on - strand, within MIT1002_00500 at 544.538 kb on + strand, within MIT1002_00500 at 544.546 kb on - strand, within MIT1002_00500 at 544.643 kb on + strand, within MIT1002_00500 at 544.676 kb on + strand, within MIT1002_00500 at 544.684 kb on - strand, within MIT1002_00500 at 544.756 kb on - strand, within MIT1002_00500 at 544.761 kb on - strand, within MIT1002_00500 at 544.761 kb on - strand, within MIT1002_00500
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 540,657 - MIT1002_00498 0.38 -0.0 540,658 - MIT1002_00498 0.39 +0.6 540,757 + -0.4 540,763 - +0.5 540,763 - +0.1 540,765 + +0.0 540,772 + -0.0 541,138 + -1.7 541,138 + -0.5 541,145 + +0.5 541,146 - -2.0 541,162 - +0.6 541,284 - +0.2 541,353 + -0.8 541,373 - -0.5 541,497 + -2.2 541,497 + -0.3 541,504 + +0.2 541,504 + -3.2 541,505 - -1.5 541,512 - +1.2 541,513 + +0.5 541,581 + MIT1002_00499 0.11 -0.5 541,581 + MIT1002_00499 0.11 -0.2 541,589 - MIT1002_00499 0.11 -2.6 541,656 - MIT1002_00499 0.14 +1.2 541,716 - MIT1002_00499 0.16 +0.2 541,734 + MIT1002_00499 0.17 +1.1 541,759 - MIT1002_00499 0.18 -0.2 541,773 + MIT1002_00499 0.18 +1.2 541,783 + MIT1002_00499 0.19 -2.8 541,791 - MIT1002_00499 0.19 -0.8 541,791 - MIT1002_00499 0.19 -1.5 541,848 - MIT1002_00499 0.21 -0.3 541,850 + MIT1002_00499 0.22 -1.4 541,853 - MIT1002_00499 0.22 +0.2 541,855 + MIT1002_00499 0.22 -0.2 541,863 - MIT1002_00499 0.22 -0.7 541,863 - MIT1002_00499 0.22 +2.1 541,863 - MIT1002_00499 0.22 -0.6 541,863 - MIT1002_00499 0.22 -0.9 541,863 - MIT1002_00499 0.22 -1.2 541,863 - MIT1002_00499 0.22 +0.7 541,863 - MIT1002_00499 0.22 -0.3 541,891 + MIT1002_00499 0.23 +1.3 541,903 + MIT1002_00499 0.24 -1.5 542,002 + MIT1002_00499 0.28 +0.4 542,002 + MIT1002_00499 0.28 -0.6 542,010 - MIT1002_00499 0.28 +0.1 542,010 - MIT1002_00499 0.28 -1.6 542,012 + MIT1002_00499 0.28 -1.0 542,014 - MIT1002_00499 0.28 -1.0 542,024 - MIT1002_00499 0.29 +0.7 542,034 - MIT1002_00499 0.29 +0.3 542,034 - MIT1002_00499 0.29 -0.3 542,086 - MIT1002_00499 0.31 +0.1 542,089 + MIT1002_00499 0.31 +1.2 542,121 + MIT1002_00499 0.33 -0.5 542,134 - MIT1002_00499 0.33 -1.4 542,243 + MIT1002_00499 0.37 +0.8 542,253 + MIT1002_00499 0.38 +1.5 542,263 + MIT1002_00499 0.38 -0.2 542,292 + MIT1002_00499 0.39 +1.1 542,307 - MIT1002_00499 0.40 -0.6 542,307 - MIT1002_00499 0.40 -1.1 542,307 - MIT1002_00499 0.40 +1.1 542,307 - MIT1002_00499 0.40 -2.5 542,311 + MIT1002_00499 0.40 +0.5 542,311 + MIT1002_00499 0.40 +0.5 542,311 + MIT1002_00499 0.40 -2.3 542,316 + MIT1002_00499 0.40 +0.5 542,316 + MIT1002_00499 0.40 -1.9 542,316 + MIT1002_00499 0.40 +1.1 542,319 - MIT1002_00499 0.41 +0.8 542,324 - MIT1002_00499 0.41 +1.5 542,324 - MIT1002_00499 0.41 -0.5 542,331 + MIT1002_00499 0.41 -0.3 542,380 - MIT1002_00499 0.43 -0.6 542,409 + MIT1002_00499 0.44 +0.5 542,411 + MIT1002_00499 0.44 +1.2 542,472 - MIT1002_00499 0.47 -0.0 542,615 - MIT1002_00499 0.53 +0.1 542,617 - MIT1002_00499 0.53 -1.3 542,654 - MIT1002_00499 0.54 -0.1 542,693 + MIT1002_00499 0.56 +0.1 542,693 + MIT1002_00499 0.56 -0.3 542,740 - MIT1002_00499 0.58 +0.1 542,742 + MIT1002_00499 0.58 +0.2 542,776 - MIT1002_00499 0.59 +0.2 542,798 + MIT1002_00499 0.60 +0.2 542,798 + MIT1002_00499 0.60 -1.1 542,806 - MIT1002_00499 0.60 +0.8 542,806 - MIT1002_00499 0.60 +0.7 542,806 - MIT1002_00499 0.60 -2.8 542,855 + MIT1002_00499 0.62 +0.2 542,855 + MIT1002_00499 0.62 +1.4 542,870 - MIT1002_00499 0.63 -0.1 542,923 - MIT1002_00499 0.65 -1.4 542,947 - MIT1002_00499 0.66 +1.5 542,956 - MIT1002_00499 0.66 -1.2 543,017 + MIT1002_00499 0.69 +2.5 543,018 - MIT1002_00499 0.69 +1.0 543,113 + MIT1002_00499 0.73 +0.2 543,113 + MIT1002_00499 0.73 -0.6 543,121 - MIT1002_00499 0.73 +0.2 543,128 + MIT1002_00499 0.73 -0.2 543,128 + MIT1002_00499 0.73 +0.1 543,128 + MIT1002_00499 0.73 -0.7 543,128 + MIT1002_00499 0.73 -1.1 543,128 + MIT1002_00499 0.73 +1.7 543,136 - MIT1002_00499 0.74 +0.3 543,136 - MIT1002_00499 0.74 -0.4 543,136 - MIT1002_00499 0.74 -0.2 543,142 + MIT1002_00499 0.74 -1.5 543,156 - MIT1002_00499 0.74 +1.6 543,215 + MIT1002_00499 0.77 -0.2 543,216 - MIT1002_00499 0.77 -0.8 543,223 - MIT1002_00499 0.77 +0.6 543,291 - MIT1002_00499 0.80 -0.3 543,349 - MIT1002_00499 0.82 +2.1 543,354 - MIT1002_00499 0.82 +0.1 543,362 - MIT1002_00499 0.83 +1.2 543,372 + MIT1002_00499 0.83 -0.9 543,408 + MIT1002_00499 0.85 +2.1 543,426 + MIT1002_00499 0.85 -0.2 543,434 - MIT1002_00499 0.86 +0.1 543,498 + MIT1002_00499 0.88 -0.5 543,506 - MIT1002_00499 0.89 -0.5 543,506 - MIT1002_00499 0.89 -2.1 543,516 - MIT1002_00499 0.89 -2.1 543,537 + MIT1002_00499 0.90 +0.5 543,637 + -3.7 543,646 + +0.2 543,667 + -2.3 543,667 + +0.6 543,696 - +0.4 543,735 + +1.3 543,735 + -0.4 543,759 - +0.2 543,759 - +0.9 543,793 - -1.4 543,793 - -0.5 543,900 + -0.5 543,961 + +0.7 543,969 - -0.8 543,969 - +0.7 544,070 + MIT1002_00500 0.12 +2.0 544,149 + MIT1002_00500 0.17 +0.5 544,149 + MIT1002_00500 0.17 +0.5 544,149 + MIT1002_00500 0.17 +0.5 544,149 + MIT1002_00500 0.17 -0.3 544,149 + MIT1002_00500 0.17 -0.9 544,149 + MIT1002_00500 0.17 +1.0 544,157 - MIT1002_00500 0.18 +0.2 544,157 - MIT1002_00500 0.18 +0.4 544,157 - MIT1002_00500 0.18 -0.3 544,157 - MIT1002_00500 0.18 -1.0 544,157 - MIT1002_00500 0.18 -0.7 544,157 - MIT1002_00500 0.18 +0.2 544,157 - MIT1002_00500 0.18 +0.5 544,157 - MIT1002_00500 0.18 -0.5 544,190 - MIT1002_00500 0.20 -0.0 544,269 - MIT1002_00500 0.25 -3.2 544,312 + MIT1002_00500 0.27 -0.9 544,374 + MIT1002_00500 0.31 -2.5 544,374 + MIT1002_00500 0.31 +0.7 544,382 - MIT1002_00500 0.32 -0.6 544,463 + MIT1002_00500 0.37 +1.4 544,463 + MIT1002_00500 0.37 -0.9 544,463 + MIT1002_00500 0.37 -0.5 544,463 + MIT1002_00500 0.37 -0.2 544,463 + MIT1002_00500 0.37 -1.4 544,463 + MIT1002_00500 0.37 +0.3 544,463 + MIT1002_00500 0.37 -0.9 544,463 + MIT1002_00500 0.37 +0.1 544,471 - MIT1002_00500 0.38 -1.2 544,471 - MIT1002_00500 0.38 +0.2 544,471 - MIT1002_00500 0.38 +0.2 544,498 - MIT1002_00500 0.39 -0.8 544,508 + MIT1002_00500 0.40 -1.6 544,516 - MIT1002_00500 0.40 +0.9 544,519 + MIT1002_00500 0.41 +0.5 544,526 - MIT1002_00500 0.41 -1.5 544,538 + MIT1002_00500 0.42 +0.4 544,546 - MIT1002_00500 0.42 +1.6 544,643 + MIT1002_00500 0.49 -0.5 544,676 + MIT1002_00500 0.51 -0.9 544,684 - MIT1002_00500 0.51 -1.5 544,756 - MIT1002_00500 0.56 -0.0 544,761 - MIT1002_00500 0.56 -2.7 544,761 - MIT1002_00500 0.56 +1.0
Or see this region's nucleotide sequence