Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00469 and MIT1002_00470 overlap by 4 nucleotides MIT1002_00470 and MIT1002_00471 overlap by 4 nucleotides MIT1002_00471 and MIT1002_00472 are separated by 613 nucleotides
MIT1002_00469: MIT1002_00469 - Ornithine carbamoyltransferase, at 513,184 to 514,095
_00469
MIT1002_00470: MIT1002_00470 - Acetylglutamate kinase, at 514,092 to 514,937
_00470
MIT1002_00471: MIT1002_00471 - N-acetyl-gamma-glutamyl-phosphate reductase, at 514,934 to 515,947
_00471
MIT1002_00472: MIT1002_00472 - Methylglyoxal synthase, at 516,561 to 516,971
_00472
Position (kb) 514
515
516 Strain fitness (log2 ratio) -8
-7
-6
-5
-4
-3
-2
-1
0
1
2 at 513.963 kb on + strand, within MIT1002_00469 at 514.068 kb on + strand at 514.075 kb on + strand at 514.075 kb on + strand at 514.083 kb on - strand at 514.083 kb on - strand at 514.083 kb on - strand at 514.083 kb on - strand at 514.083 kb on - strand at 514.083 kb on - strand at 514.083 kb on - strand at 514.089 kb on + strand at 514.134 kb on + strand at 514.134 kb on + strand at 514.142 kb on - strand at 514.159 kb on + strand at 514.167 kb on - strand at 514.169 kb on + strand at 514.177 kb on - strand, within MIT1002_00470 at 514.189 kb on - strand, within MIT1002_00470 at 514.297 kb on - strand, within MIT1002_00470 at 514.317 kb on + strand, within MIT1002_00470 at 514.325 kb on - strand, within MIT1002_00470 at 514.428 kb on - strand, within MIT1002_00470 at 514.487 kb on + strand, within MIT1002_00470 at 514.488 kb on + strand, within MIT1002_00470 at 514.496 kb on + strand, within MIT1002_00470 at 514.587 kb on - strand, within MIT1002_00470 at 514.592 kb on - strand, within MIT1002_00470 at 514.600 kb on + strand, within MIT1002_00470 at 514.616 kb on - strand, within MIT1002_00470 at 514.647 kb on + strand, within MIT1002_00470 at 514.655 kb on - strand, within MIT1002_00470 at 514.655 kb on - strand, within MIT1002_00470 at 514.655 kb on - strand, within MIT1002_00470 at 514.672 kb on + strand, within MIT1002_00470 at 514.672 kb on + strand, within MIT1002_00470 at 514.672 kb on + strand, within MIT1002_00470 at 514.672 kb on + strand, within MIT1002_00470 at 514.680 kb on - strand, within MIT1002_00470 at 514.689 kb on + strand, within MIT1002_00470 at 514.695 kb on + strand, within MIT1002_00470 at 514.720 kb on + strand, within MIT1002_00470 at 514.720 kb on + strand, within MIT1002_00470 at 514.725 kb on + strand, within MIT1002_00470 at 514.728 kb on - strand, within MIT1002_00470 at 514.749 kb on - strand, within MIT1002_00470 at 514.767 kb on + strand, within MIT1002_00470 at 514.796 kb on + strand, within MIT1002_00470 at 514.804 kb on - strand, within MIT1002_00470 at 514.850 kb on + strand, within MIT1002_00470 at 514.903 kb on - strand at 514.933 kb on + strand at 514.939 kb on + strand at 514.947 kb on - strand at 514.948 kb on - strand at 514.948 kb on - strand at 514.949 kb on + strand at 514.958 kb on - strand at 514.974 kb on + strand at 515.007 kb on - strand at 515.033 kb on + strand at 515.033 kb on + strand at 515.074 kb on - strand, within MIT1002_00471 at 515.098 kb on - strand, within MIT1002_00471 at 515.141 kb on + strand, within MIT1002_00471 at 515.143 kb on - strand, within MIT1002_00471 at 515.159 kb on - strand, within MIT1002_00471 at 515.163 kb on + strand, within MIT1002_00471 at 515.163 kb on + strand, within MIT1002_00471 at 515.163 kb on + strand, within MIT1002_00471 at 515.163 kb on + strand, within MIT1002_00471 at 515.163 kb on + strand, within MIT1002_00471 at 515.197 kb on - strand, within MIT1002_00471 at 515.199 kb on + strand, within MIT1002_00471 at 515.199 kb on + strand, within MIT1002_00471 at 515.199 kb on + strand, within MIT1002_00471 at 515.199 kb on + strand, within MIT1002_00471 at 515.199 kb on + strand, within MIT1002_00471 at 515.207 kb on - strand, within MIT1002_00471 at 515.207 kb on - strand, within MIT1002_00471 at 515.207 kb on - strand, within MIT1002_00471 at 515.207 kb on - strand, within MIT1002_00471 at 515.207 kb on - strand, within MIT1002_00471 at 515.312 kb on + strand, within MIT1002_00471 at 515.316 kb on + strand, within MIT1002_00471 at 515.320 kb on - strand, within MIT1002_00471 at 515.322 kb on + strand, within MIT1002_00471 at 515.322 kb on + strand, within MIT1002_00471 at 515.322 kb on + strand, within MIT1002_00471 at 515.322 kb on - strand, within MIT1002_00471 at 515.390 kb on + strand, within MIT1002_00471 at 515.398 kb on - strand, within MIT1002_00471 at 515.408 kb on - strand, within MIT1002_00471 at 515.451 kb on + strand, within MIT1002_00471 at 515.461 kb on + strand, within MIT1002_00471 at 515.473 kb on + strand, within MIT1002_00471 at 515.494 kb on - strand, within MIT1002_00471 at 515.511 kb on - strand, within MIT1002_00471 at 515.543 kb on + strand, within MIT1002_00471 at 515.543 kb on + strand, within MIT1002_00471 at 515.551 kb on - strand, within MIT1002_00471 at 515.551 kb on - strand, within MIT1002_00471 at 515.572 kb on - strand, within MIT1002_00471 at 515.597 kb on - strand, within MIT1002_00471 at 515.597 kb on - strand, within MIT1002_00471 at 515.597 kb on - strand, within MIT1002_00471 at 515.617 kb on + strand, within MIT1002_00471 at 515.617 kb on + strand, within MIT1002_00471 at 515.625 kb on - strand, within MIT1002_00471 at 515.625 kb on - strand, within MIT1002_00471 at 515.625 kb on - strand, within MIT1002_00471 at 515.639 kb on - strand, within MIT1002_00471 at 515.692 kb on - strand, within MIT1002_00471 at 515.773 kb on + strand, within MIT1002_00471 at 515.816 kb on + strand, within MIT1002_00471 at 515.816 kb on + strand, within MIT1002_00471 at 515.816 kb on + strand, within MIT1002_00471 at 515.816 kb on + strand, within MIT1002_00471 at 515.824 kb on - strand, within MIT1002_00471 at 515.824 kb on - strand, within MIT1002_00471 at 515.824 kb on - strand, within MIT1002_00471 at 515.840 kb on - strand, within MIT1002_00471 at 515.898 kb on + strand at 515.909 kb on + strand at 516.087 kb on + strand at 516.092 kb on + strand at 516.095 kb on - strand at 516.112 kb on + strand at 516.117 kb on + strand at 516.124 kb on + strand at 516.356 kb on + strand at 516.436 kb on - strand at 516.436 kb on - strand at 516.473 kb on + strand at 516.475 kb on + strand at 516.481 kb on - strand at 516.481 kb on - strand at 516.481 kb on - strand at 516.483 kb on - strand at 516.501 kb on - strand at 516.519 kb on - strand at 516.541 kb on + strand at 516.593 kb on - strand at 516.622 kb on + strand, within MIT1002_00472 at 516.622 kb on + strand, within MIT1002_00472 at 516.622 kb on + strand, within MIT1002_00472 at 516.632 kb on + strand, within MIT1002_00472 at 516.632 kb on + strand, within MIT1002_00472 at 516.634 kb on + strand, within MIT1002_00472 at 516.634 kb on + strand, within MIT1002_00472 at 516.653 kb on + strand, within MIT1002_00472 at 516.661 kb on - strand, within MIT1002_00472 at 516.661 kb on - strand, within MIT1002_00472 at 516.661 kb on - strand, within MIT1002_00472 at 516.671 kb on + strand, within MIT1002_00472 at 516.685 kb on + strand, within MIT1002_00472 at 516.706 kb on + strand, within MIT1002_00472 at 516.745 kb on - strand, within MIT1002_00472 at 516.760 kb on - strand, within MIT1002_00472 at 516.812 kb on + strand, within MIT1002_00472 at 516.817 kb on + strand, within MIT1002_00472 at 516.832 kb on + strand, within MIT1002_00472 at 516.832 kb on + strand, within MIT1002_00472 at 516.839 kb on + strand, within MIT1002_00472 at 516.840 kb on - strand, within MIT1002_00472 at 516.857 kb on + strand, within MIT1002_00472 at 516.868 kb on - strand, within MIT1002_00472 at 516.871 kb on + strand, within MIT1002_00472 at 516.872 kb on + strand, within MIT1002_00472 at 516.872 kb on + strand, within MIT1002_00472 at 516.896 kb on + strand, within MIT1002_00472 at 516.896 kb on + strand, within MIT1002_00472 at 516.896 kb on + strand, within MIT1002_00472
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 513,963 + MIT1002_00469 0.85 -4.0 514,068 + -3.2 514,075 + -3.1 514,075 + -0.3 514,083 - -4.0 514,083 - -1.0 514,083 - -3.4 514,083 - -3.0 514,083 - -1.0 514,083 - -4.9 514,083 - -5.7 514,089 + -6.9 514,134 + -4.3 514,134 + -5.8 514,142 - +0.2 514,159 + -4.7 514,167 - -1.1 514,169 + -2.6 514,177 - MIT1002_00470 0.10 +0.2 514,189 - MIT1002_00470 0.11 -0.2 514,297 - MIT1002_00470 0.24 -2.5 514,317 + MIT1002_00470 0.27 -1.3 514,325 - MIT1002_00470 0.28 -4.6 514,428 - MIT1002_00470 0.40 -2.6 514,487 + MIT1002_00470 0.47 -5.4 514,488 + MIT1002_00470 0.47 -4.5 514,496 + MIT1002_00470 0.48 -3.9 514,587 - MIT1002_00470 0.59 -3.6 514,592 - MIT1002_00470 0.59 -4.1 514,600 + MIT1002_00470 0.60 -4.6 514,616 - MIT1002_00470 0.62 -1.0 514,647 + MIT1002_00470 0.66 -2.7 514,655 - MIT1002_00470 0.67 -7.6 514,655 - MIT1002_00470 0.67 -5.1 514,655 - MIT1002_00470 0.67 -2.0 514,672 + MIT1002_00470 0.69 -3.4 514,672 + MIT1002_00470 0.69 -4.6 514,672 + MIT1002_00470 0.69 -3.4 514,672 + MIT1002_00470 0.69 -5.7 514,680 - MIT1002_00470 0.70 -3.7 514,689 + MIT1002_00470 0.71 -4.2 514,695 + MIT1002_00470 0.71 -4.1 514,720 + MIT1002_00470 0.74 -5.8 514,720 + MIT1002_00470 0.74 -3.9 514,725 + MIT1002_00470 0.75 -5.6 514,728 - MIT1002_00470 0.75 -3.6 514,749 - MIT1002_00470 0.78 -3.5 514,767 + MIT1002_00470 0.80 -4.5 514,796 + MIT1002_00470 0.83 -3.6 514,804 - MIT1002_00470 0.84 -4.4 514,850 + MIT1002_00470 0.90 -2.2 514,903 - -1.1 514,933 + -3.6 514,939 + -3.4 514,947 - +1.0 514,948 - +1.3 514,948 - -0.7 514,949 + -2.7 514,958 - +0.9 514,974 + -4.3 515,007 - -3.9 515,033 + -1.5 515,033 + -4.6 515,074 - MIT1002_00471 0.14 -4.0 515,098 - MIT1002_00471 0.16 -1.5 515,141 + MIT1002_00471 0.20 -3.1 515,143 - MIT1002_00471 0.21 -5.2 515,159 - MIT1002_00471 0.22 -4.2 515,163 + MIT1002_00471 0.23 -3.4 515,163 + MIT1002_00471 0.23 -4.3 515,163 + MIT1002_00471 0.23 -4.2 515,163 + MIT1002_00471 0.23 -3.7 515,163 + MIT1002_00471 0.23 -2.3 515,197 - MIT1002_00471 0.26 -3.8 515,199 + MIT1002_00471 0.26 -2.3 515,199 + MIT1002_00471 0.26 -3.3 515,199 + MIT1002_00471 0.26 -2.0 515,199 + MIT1002_00471 0.26 -4.1 515,199 + MIT1002_00471 0.26 -1.3 515,207 - MIT1002_00471 0.27 -1.8 515,207 - MIT1002_00471 0.27 -5.7 515,207 - MIT1002_00471 0.27 -1.4 515,207 - MIT1002_00471 0.27 -5.0 515,207 - MIT1002_00471 0.27 -3.8 515,312 + MIT1002_00471 0.37 -3.7 515,316 + MIT1002_00471 0.38 -7.5 515,320 - MIT1002_00471 0.38 -3.4 515,322 + MIT1002_00471 0.38 -2.7 515,322 + MIT1002_00471 0.38 -3.6 515,322 + MIT1002_00471 0.38 -8.4 515,322 - MIT1002_00471 0.38 -5.0 515,390 + MIT1002_00471 0.45 -2.7 515,398 - MIT1002_00471 0.46 +0.0 515,408 - MIT1002_00471 0.47 -4.3 515,451 + MIT1002_00471 0.51 -4.9 515,461 + MIT1002_00471 0.52 -2.6 515,473 + MIT1002_00471 0.53 -3.1 515,494 - MIT1002_00471 0.55 -4.7 515,511 - MIT1002_00471 0.57 -4.5 515,543 + MIT1002_00471 0.60 -5.8 515,543 + MIT1002_00471 0.60 -4.4 515,551 - MIT1002_00471 0.61 -7.3 515,551 - MIT1002_00471 0.61 -1.1 515,572 - MIT1002_00471 0.63 +0.0 515,597 - MIT1002_00471 0.65 -5.0 515,597 - MIT1002_00471 0.65 -4.9 515,597 - MIT1002_00471 0.65 -4.1 515,617 + MIT1002_00471 0.67 -4.0 515,617 + MIT1002_00471 0.67 -3.0 515,625 - MIT1002_00471 0.68 -4.5 515,625 - MIT1002_00471 0.68 -4.6 515,625 - MIT1002_00471 0.68 -5.9 515,639 - MIT1002_00471 0.70 -2.6 515,692 - MIT1002_00471 0.75 -4.8 515,773 + MIT1002_00471 0.83 -2.0 515,816 + MIT1002_00471 0.87 -8.1 515,816 + MIT1002_00471 0.87 -0.3 515,816 + MIT1002_00471 0.87 -4.1 515,816 + MIT1002_00471 0.87 -3.7 515,824 - MIT1002_00471 0.88 -4.3 515,824 - MIT1002_00471 0.88 -0.5 515,824 - MIT1002_00471 0.88 -4.2 515,840 - MIT1002_00471 0.89 -5.0 515,898 + -4.7 515,909 + -5.7 516,087 + -1.6 516,092 + -1.1 516,095 - +2.2 516,112 + -3.6 516,117 + -4.8 516,124 + -4.5 516,356 + +0.9 516,436 - +1.0 516,436 - +0.2 516,473 + +0.1 516,475 + -0.2 516,481 - -0.0 516,481 - -0.3 516,481 - +0.0 516,483 - +0.7 516,501 - -0.4 516,519 - +0.1 516,541 + +0.1 516,593 - +0.0 516,622 + MIT1002_00472 0.15 -0.0 516,622 + MIT1002_00472 0.15 -0.5 516,622 + MIT1002_00472 0.15 +0.6 516,632 + MIT1002_00472 0.17 -0.5 516,632 + MIT1002_00472 0.17 -3.2 516,634 + MIT1002_00472 0.18 -0.2 516,634 + MIT1002_00472 0.18 +1.9 516,653 + MIT1002_00472 0.22 -2.5 516,661 - MIT1002_00472 0.24 -1.3 516,661 - MIT1002_00472 0.24 -0.9 516,661 - MIT1002_00472 0.24 +0.1 516,671 + MIT1002_00472 0.27 -1.1 516,685 + MIT1002_00472 0.30 -0.9 516,706 + MIT1002_00472 0.35 -0.6 516,745 - MIT1002_00472 0.45 +0.1 516,760 - MIT1002_00472 0.48 -0.3 516,812 + MIT1002_00472 0.61 -0.5 516,817 + MIT1002_00472 0.62 -1.2 516,832 + MIT1002_00472 0.66 -3.1 516,832 + MIT1002_00472 0.66 +0.5 516,839 + MIT1002_00472 0.68 -0.3 516,840 - MIT1002_00472 0.68 -0.6 516,857 + MIT1002_00472 0.72 +0.1 516,868 - MIT1002_00472 0.75 -0.3 516,871 + MIT1002_00472 0.75 +0.3 516,872 + MIT1002_00472 0.76 -0.8 516,872 + MIT1002_00472 0.76 -2.0 516,896 + MIT1002_00472 0.82 -1.9 516,896 + MIT1002_00472 0.82 -1.5 516,896 + MIT1002_00472 0.82 -2.3
Or see this region's nucleotide sequence