Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00440 and MIT1002_00441 are separated by 65 nucleotides MIT1002_00441 and MIT1002_00442 are separated by 398 nucleotides
MIT1002_00440: MIT1002_00440 - Tryptophan--tRNA ligase, at 482,095 to 483,102
_00440
MIT1002_00441: MIT1002_00441 - Ribulose-phosphate 3-epimerase, at 483,168 to 483,845
_00441
MIT1002_00442: MIT1002_00442 - Bacterial protein of unknown function (Gcw_chp), at 484,244 to 484,969
_00442
Position (kb) 483
484 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 483.899 kb on - strand at 483.934 kb on - strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.943 kb on + strand at 483.951 kb on - strand at 483.951 kb on - strand at 483.951 kb on - strand at 483.951 kb on - strand at 483.984 kb on - strand at 484.028 kb on - strand at 484.166 kb on + strand at 484.166 kb on + strand at 484.174 kb on - strand at 484.233 kb on + strand at 484.243 kb on + strand at 484.300 kb on + strand at 484.338 kb on + strand, within MIT1002_00442 at 484.366 kb on + strand, within MIT1002_00442 at 484.377 kb on + strand, within MIT1002_00442 at 484.377 kb on + strand, within MIT1002_00442 at 484.403 kb on + strand, within MIT1002_00442 at 484.406 kb on + strand, within MIT1002_00442 at 484.406 kb on + strand, within MIT1002_00442 at 484.406 kb on + strand, within MIT1002_00442 at 484.406 kb on + strand, within MIT1002_00442 at 484.411 kb on + strand, within MIT1002_00442 at 484.413 kb on + strand, within MIT1002_00442 at 484.414 kb on - strand, within MIT1002_00442 at 484.414 kb on - strand, within MIT1002_00442 at 484.414 kb on - strand, within MIT1002_00442 at 484.416 kb on - strand, within MIT1002_00442 at 484.494 kb on + strand, within MIT1002_00442 at 484.516 kb on - strand, within MIT1002_00442 at 484.533 kb on + strand, within MIT1002_00442 at 484.534 kb on + strand, within MIT1002_00442 at 484.610 kb on + strand, within MIT1002_00442 at 484.618 kb on - strand, within MIT1002_00442 at 484.632 kb on - strand, within MIT1002_00442 at 484.635 kb on + strand, within MIT1002_00442 at 484.647 kb on + strand, within MIT1002_00442 at 484.657 kb on - strand, within MIT1002_00442 at 484.666 kb on + strand, within MIT1002_00442 at 484.666 kb on + strand, within MIT1002_00442 at 484.666 kb on + strand, within MIT1002_00442 at 484.674 kb on - strand, within MIT1002_00442 at 484.720 kb on - strand, within MIT1002_00442 at 484.755 kb on + strand, within MIT1002_00442 at 484.755 kb on + strand, within MIT1002_00442 at 484.805 kb on + strand, within MIT1002_00442 at 484.813 kb on - strand, within MIT1002_00442 at 484.815 kb on + strand, within MIT1002_00442 at 484.815 kb on + strand, within MIT1002_00442 at 484.815 kb on + strand, within MIT1002_00442 at 484.822 kb on + strand, within MIT1002_00442 at 484.823 kb on - strand, within MIT1002_00442 at 484.824 kb on + strand, within MIT1002_00442
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 483,899 - -1.9 483,934 - -0.8 483,943 + +0.3 483,943 + +1.6 483,943 + -1.0 483,943 + +0.5 483,943 + +1.4 483,951 - +0.1 483,951 - +0.2 483,951 - -0.5 483,951 - +0.5 483,984 - +0.7 484,028 - -0.1 484,166 + -0.2 484,166 + -1.6 484,174 - -0.2 484,233 + -0.0 484,243 + +1.1 484,300 + -0.2 484,338 + MIT1002_00442 0.13 -0.5 484,366 + MIT1002_00442 0.17 +1.2 484,377 + MIT1002_00442 0.18 -0.3 484,377 + MIT1002_00442 0.18 -0.9 484,403 + MIT1002_00442 0.22 +0.5 484,406 + MIT1002_00442 0.22 -1.1 484,406 + MIT1002_00442 0.22 -0.5 484,406 + MIT1002_00442 0.22 -0.2 484,406 + MIT1002_00442 0.22 +0.4 484,411 + MIT1002_00442 0.23 +1.4 484,413 + MIT1002_00442 0.23 +0.9 484,414 - MIT1002_00442 0.23 -0.3 484,414 - MIT1002_00442 0.23 -2.0 484,414 - MIT1002_00442 0.23 -1.4 484,416 - MIT1002_00442 0.24 +1.5 484,494 + MIT1002_00442 0.34 +0.1 484,516 - MIT1002_00442 0.37 +1.5 484,533 + MIT1002_00442 0.40 +0.6 484,534 + MIT1002_00442 0.40 -0.3 484,610 + MIT1002_00442 0.50 +0.2 484,618 - MIT1002_00442 0.52 +0.0 484,632 - MIT1002_00442 0.53 +0.6 484,635 + MIT1002_00442 0.54 +1.0 484,647 + MIT1002_00442 0.56 +0.7 484,657 - MIT1002_00442 0.57 -1.0 484,666 + MIT1002_00442 0.58 +0.6 484,666 + MIT1002_00442 0.58 -0.0 484,666 + MIT1002_00442 0.58 +0.5 484,674 - MIT1002_00442 0.59 +1.5 484,720 - MIT1002_00442 0.66 +1.1 484,755 + MIT1002_00442 0.70 -1.1 484,755 + MIT1002_00442 0.70 +0.1 484,805 + MIT1002_00442 0.77 +1.6 484,813 - MIT1002_00442 0.78 -0.6 484,815 + MIT1002_00442 0.79 +0.1 484,815 + MIT1002_00442 0.79 -2.3 484,815 + MIT1002_00442 0.79 -0.3 484,822 + MIT1002_00442 0.80 -0.4 484,823 - MIT1002_00442 0.80 +3.0 484,824 + MIT1002_00442 0.80 +0.4
Or see this region's nucleotide sequence