Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00395 and MIT1002_00396 are separated by 294 nucleotides MIT1002_00396 and MIT1002_00397 are separated by 210 nucleotides
MIT1002_00395: MIT1002_00395 - 3-deoxy-D-manno-octulosonic acid transferase, at 422,401 to 423,711
_00395
MIT1002_00396: MIT1002_00396 - potassium/proton antiporter, at 424,006 to 425,823
_00396
MIT1002_00397: MIT1002_00397 - hypothetical protein, at 426,034 to 426,885
_00397
Position (kb) 424
425
426 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 423.885 kb on + strand at 423.901 kb on - strand at 423.901 kb on - strand at 423.901 kb on - strand at 423.901 kb on - strand at 424.073 kb on + strand at 424.080 kb on + strand at 424.081 kb on - strand at 424.096 kb on - strand at 424.114 kb on + strand at 424.122 kb on - strand at 424.124 kb on + strand at 424.172 kb on - strand at 424.172 kb on - strand at 424.275 kb on + strand, within MIT1002_00396 at 424.381 kb on + strand, within MIT1002_00396 at 424.388 kb on + strand, within MIT1002_00396 at 424.405 kb on - strand, within MIT1002_00396 at 424.405 kb on - strand, within MIT1002_00396 at 424.418 kb on + strand, within MIT1002_00396 at 424.418 kb on + strand, within MIT1002_00396 at 424.475 kb on + strand, within MIT1002_00396 at 424.483 kb on - strand, within MIT1002_00396 at 424.507 kb on - strand, within MIT1002_00396 at 424.545 kb on + strand, within MIT1002_00396 at 424.597 kb on + strand, within MIT1002_00396 at 424.609 kb on - strand, within MIT1002_00396 at 424.662 kb on + strand, within MIT1002_00396 at 424.685 kb on - strand, within MIT1002_00396 at 424.685 kb on - strand, within MIT1002_00396 at 424.685 kb on - strand, within MIT1002_00396 at 424.791 kb on - strand, within MIT1002_00396 at 424.842 kb on + strand, within MIT1002_00396 at 424.873 kb on + strand, within MIT1002_00396 at 424.873 kb on + strand, within MIT1002_00396 at 424.883 kb on + strand, within MIT1002_00396 at 424.891 kb on - strand, within MIT1002_00396 at 424.968 kb on - strand, within MIT1002_00396 at 424.968 kb on - strand, within MIT1002_00396 at 424.989 kb on + strand, within MIT1002_00396 at 425.025 kb on + strand, within MIT1002_00396 at 425.065 kb on - strand, within MIT1002_00396 at 425.105 kb on - strand, within MIT1002_00396 at 425.150 kb on - strand, within MIT1002_00396 at 425.241 kb on + strand, within MIT1002_00396 at 425.268 kb on + strand, within MIT1002_00396 at 425.268 kb on + strand, within MIT1002_00396 at 425.350 kb on + strand, within MIT1002_00396 at 425.358 kb on - strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.408 kb on + strand, within MIT1002_00396 at 425.416 kb on - strand, within MIT1002_00396 at 425.416 kb on - strand, within MIT1002_00396 at 425.416 kb on - strand, within MIT1002_00396 at 425.416 kb on - strand, within MIT1002_00396 at 425.416 kb on - strand, within MIT1002_00396 at 425.416 kb on - strand, within MIT1002_00396 at 425.416 kb on - strand, within MIT1002_00396 at 425.416 kb on - strand, within MIT1002_00396 at 425.416 kb on - strand, within MIT1002_00396 at 425.432 kb on - strand, within MIT1002_00396 at 425.432 kb on - strand, within MIT1002_00396 at 425.487 kb on + strand, within MIT1002_00396 at 425.487 kb on + strand, within MIT1002_00396 at 425.492 kb on + strand, within MIT1002_00396 at 425.495 kb on + strand, within MIT1002_00396 at 425.495 kb on - strand, within MIT1002_00396 at 425.505 kb on - strand, within MIT1002_00396 at 425.505 kb on - strand, within MIT1002_00396 at 425.527 kb on + strand, within MIT1002_00396 at 425.534 kb on + strand, within MIT1002_00396 at 425.577 kb on - strand, within MIT1002_00396 at 425.736 kb on - strand at 425.751 kb on - strand at 425.752 kb on + strand at 425.766 kb on - strand at 425.774 kb on + strand at 425.865 kb on + strand at 425.889 kb on + strand at 425.926 kb on + strand at 426.095 kb on + strand at 426.097 kb on + strand at 426.105 kb on - strand at 426.112 kb on - strand at 426.113 kb on + strand at 426.121 kb on - strand, within MIT1002_00397 at 426.175 kb on + strand, within MIT1002_00397 at 426.362 kb on - strand, within MIT1002_00397 at 426.406 kb on - strand, within MIT1002_00397 at 426.422 kb on + strand, within MIT1002_00397 at 426.443 kb on + strand, within MIT1002_00397 at 426.493 kb on - strand, within MIT1002_00397 at 426.509 kb on + strand, within MIT1002_00397 at 426.554 kb on + strand, within MIT1002_00397 at 426.568 kb on - strand, within MIT1002_00397 at 426.581 kb on + strand, within MIT1002_00397 at 426.602 kb on - strand, within MIT1002_00397 at 426.620 kb on - strand, within MIT1002_00397 at 426.648 kb on - strand, within MIT1002_00397 at 426.748 kb on - strand, within MIT1002_00397 at 426.749 kb on + strand, within MIT1002_00397 at 426.763 kb on - strand, within MIT1002_00397
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 423,885 + +0.3 423,901 - -1.8 423,901 - +0.8 423,901 - +0.8 423,901 - -0.3 424,073 + -0.0 424,080 + +0.5 424,081 - -0.5 424,096 - +0.9 424,114 + +0.3 424,122 - -0.1 424,124 + +0.8 424,172 - +0.3 424,172 - +1.0 424,275 + MIT1002_00396 0.15 -1.7 424,381 + MIT1002_00396 0.21 +0.5 424,388 + MIT1002_00396 0.21 -0.3 424,405 - MIT1002_00396 0.22 +1.0 424,405 - MIT1002_00396 0.22 +1.3 424,418 + MIT1002_00396 0.23 +0.6 424,418 + MIT1002_00396 0.23 -0.4 424,475 + MIT1002_00396 0.26 +1.4 424,483 - MIT1002_00396 0.26 +0.3 424,507 - MIT1002_00396 0.28 -0.2 424,545 + MIT1002_00396 0.30 -0.0 424,597 + MIT1002_00396 0.33 -2.3 424,609 - MIT1002_00396 0.33 -0.7 424,662 + MIT1002_00396 0.36 +2.8 424,685 - MIT1002_00396 0.37 -0.4 424,685 - MIT1002_00396 0.37 -0.4 424,685 - MIT1002_00396 0.37 +0.2 424,791 - MIT1002_00396 0.43 -0.3 424,842 + MIT1002_00396 0.46 -0.2 424,873 + MIT1002_00396 0.48 +0.8 424,873 + MIT1002_00396 0.48 +0.6 424,883 + MIT1002_00396 0.48 -1.1 424,891 - MIT1002_00396 0.49 -0.9 424,968 - MIT1002_00396 0.53 -1.4 424,968 - MIT1002_00396 0.53 +1.5 424,989 + MIT1002_00396 0.54 -0.2 425,025 + MIT1002_00396 0.56 +0.7 425,065 - MIT1002_00396 0.58 -1.0 425,105 - MIT1002_00396 0.60 -1.3 425,150 - MIT1002_00396 0.63 +1.7 425,241 + MIT1002_00396 0.68 -1.0 425,268 + MIT1002_00396 0.69 +0.1 425,268 + MIT1002_00396 0.69 -0.8 425,350 + MIT1002_00396 0.74 -0.3 425,358 - MIT1002_00396 0.74 -0.6 425,408 + MIT1002_00396 0.77 +0.1 425,408 + MIT1002_00396 0.77 -1.1 425,408 + MIT1002_00396 0.77 -0.0 425,408 + MIT1002_00396 0.77 +0.6 425,408 + MIT1002_00396 0.77 +1.2 425,408 + MIT1002_00396 0.77 +0.5 425,408 + MIT1002_00396 0.77 -0.4 425,408 + MIT1002_00396 0.77 -0.4 425,408 + MIT1002_00396 0.77 +0.2 425,408 + MIT1002_00396 0.77 -0.5 425,408 + MIT1002_00396 0.77 -0.4 425,408 + MIT1002_00396 0.77 -0.7 425,416 - MIT1002_00396 0.78 +2.1 425,416 - MIT1002_00396 0.78 -0.2 425,416 - MIT1002_00396 0.78 -0.4 425,416 - MIT1002_00396 0.78 -0.4 425,416 - MIT1002_00396 0.78 -0.9 425,416 - MIT1002_00396 0.78 +0.6 425,416 - MIT1002_00396 0.78 +0.3 425,416 - MIT1002_00396 0.78 +0.0 425,416 - MIT1002_00396 0.78 +0.0 425,432 - MIT1002_00396 0.78 -0.2 425,432 - MIT1002_00396 0.78 -0.3 425,487 + MIT1002_00396 0.81 -1.2 425,487 + MIT1002_00396 0.81 +0.5 425,492 + MIT1002_00396 0.82 -0.4 425,495 + MIT1002_00396 0.82 +0.5 425,495 - MIT1002_00396 0.82 +0.8 425,505 - MIT1002_00396 0.82 +0.6 425,505 - MIT1002_00396 0.82 -0.1 425,527 + MIT1002_00396 0.84 -0.6 425,534 + MIT1002_00396 0.84 +0.3 425,577 - MIT1002_00396 0.86 -1.5 425,736 - +1.4 425,751 - -0.7 425,752 + +0.2 425,766 - +1.4 425,774 + +0.8 425,865 + -0.2 425,889 + -1.0 425,926 + -2.3 426,095 + -0.0 426,097 + +0.0 426,105 - -1.1 426,112 - -0.3 426,113 + -0.4 426,121 - MIT1002_00397 0.10 -0.6 426,175 + MIT1002_00397 0.17 +0.2 426,362 - MIT1002_00397 0.38 -0.7 426,406 - MIT1002_00397 0.44 -2.0 426,422 + MIT1002_00397 0.46 +1.5 426,443 + MIT1002_00397 0.48 +0.1 426,493 - MIT1002_00397 0.54 -2.9 426,509 + MIT1002_00397 0.56 +2.1 426,554 + MIT1002_00397 0.61 -2.4 426,568 - MIT1002_00397 0.63 -2.3 426,581 + MIT1002_00397 0.64 -1.3 426,602 - MIT1002_00397 0.67 -1.7 426,620 - MIT1002_00397 0.69 -3.6 426,648 - MIT1002_00397 0.72 -1.9 426,748 - MIT1002_00397 0.84 -0.4 426,749 + MIT1002_00397 0.84 -0.9 426,763 - MIT1002_00397 0.86 -0.7
Or see this region's nucleotide sequence