Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00352

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00351 and MIT1002_00352 are separated by 166 nucleotidesMIT1002_00352 and MIT1002_00353 are separated by 2 nucleotides MIT1002_00351: MIT1002_00351 - Degradation activator, at 376,836 to 377,870 _00351 MIT1002_00352: MIT1002_00352 - putative transporter, at 378,037 to 379,275 _00352 MIT1002_00353: MIT1002_00353 - Cytoplasmic trehalase, at 379,278 to 380,801 _00353 Position (kb) 378 379 380Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 377.061 kb on - strand, within MIT1002_00351at 377.066 kb on + strand, within MIT1002_00351at 377.076 kb on + strand, within MIT1002_00351at 377.086 kb on + strand, within MIT1002_00351at 377.091 kb on - strand, within MIT1002_00351at 377.094 kb on - strand, within MIT1002_00351at 377.119 kb on + strand, within MIT1002_00351at 377.152 kb on + strand, within MIT1002_00351at 377.218 kb on - strand, within MIT1002_00351at 377.233 kb on - strand, within MIT1002_00351at 377.246 kb on + strand, within MIT1002_00351at 377.254 kb on - strand, within MIT1002_00351at 377.306 kb on - strand, within MIT1002_00351at 377.365 kb on + strand, within MIT1002_00351at 377.425 kb on + strand, within MIT1002_00351at 377.460 kb on + strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.468 kb on - strand, within MIT1002_00351at 377.483 kb on - strand, within MIT1002_00351at 377.518 kb on + strand, within MIT1002_00351at 377.526 kb on - strand, within MIT1002_00351at 377.648 kb on + strand, within MIT1002_00351at 377.648 kb on + strand, within MIT1002_00351at 377.648 kb on + strand, within MIT1002_00351at 377.651 kb on + strand, within MIT1002_00351at 377.703 kb on - strand, within MIT1002_00351at 377.831 kb on - strandat 377.833 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.848 kb on + strandat 377.853 kb on + strandat 377.853 kb on + strandat 377.854 kb on - strandat 377.856 kb on - strandat 377.856 kb on - strandat 377.856 kb on - strandat 377.856 kb on - strandat 377.858 kb on + strandat 377.995 kb on + strandat 378.006 kb on - strandat 378.008 kb on + strandat 378.030 kb on - strandat 378.094 kb on + strandat 378.094 kb on + strandat 378.094 kb on + strandat 378.096 kb on + strandat 378.096 kb on + strandat 378.102 kb on - strandat 378.102 kb on - strandat 378.104 kb on + strandat 378.113 kb on + strandat 378.194 kb on - strand, within MIT1002_00352at 378.339 kb on + strand, within MIT1002_00352at 378.491 kb on + strand, within MIT1002_00352at 378.645 kb on - strand, within MIT1002_00352at 378.651 kb on + strand, within MIT1002_00352at 378.658 kb on - strand, within MIT1002_00352at 378.676 kb on + strand, within MIT1002_00352at 378.678 kb on - strand, within MIT1002_00352at 378.678 kb on - strand, within MIT1002_00352at 378.678 kb on - strand, within MIT1002_00352at 378.718 kb on + strand, within MIT1002_00352at 378.723 kb on + strand, within MIT1002_00352at 378.731 kb on - strand, within MIT1002_00352at 378.731 kb on - strand, within MIT1002_00352at 378.760 kb on + strand, within MIT1002_00352at 378.768 kb on - strand, within MIT1002_00352at 378.768 kb on - strand, within MIT1002_00352at 378.783 kb on - strand, within MIT1002_00352at 378.820 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.847 kb on + strand, within MIT1002_00352at 378.855 kb on - strand, within MIT1002_00352at 378.855 kb on - strand, within MIT1002_00352at 378.903 kb on - strand, within MIT1002_00352at 378.905 kb on + strand, within MIT1002_00352at 378.913 kb on - strand, within MIT1002_00352at 378.920 kb on + strand, within MIT1002_00352at 378.928 kb on - strand, within MIT1002_00352at 378.983 kb on - strand, within MIT1002_00352at 379.023 kb on + strand, within MIT1002_00352at 379.023 kb on + strand, within MIT1002_00352at 379.031 kb on - strand, within MIT1002_00352at 379.031 kb on - strand, within MIT1002_00352at 379.031 kb on - strand, within MIT1002_00352at 379.031 kb on - strand, within MIT1002_00352at 379.031 kb on - strand, within MIT1002_00352at 379.033 kb on + strand, within MIT1002_00352at 379.033 kb on + strand, within MIT1002_00352at 379.041 kb on - strand, within MIT1002_00352at 379.041 kb on - strand, within MIT1002_00352at 379.041 kb on - strand, within MIT1002_00352at 379.050 kb on + strand, within MIT1002_00352at 379.116 kb on + strand, within MIT1002_00352at 379.144 kb on + strand, within MIT1002_00352at 379.144 kb on + strand, within MIT1002_00352at 379.219 kb on + strandat 379.219 kb on + strandat 379.257 kb on + strandat 379.257 kb on + strandat 379.257 kb on + strandat 379.257 kb on + strandat 379.257 kb on + strandat 379.257 kb on + strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.265 kb on - strandat 379.334 kb on + strandat 379.342 kb on - strandat 379.342 kb on - strandat 379.414 kb on - strandat 379.438 kb on - strand, within MIT1002_00353at 379.579 kb on - strand, within MIT1002_00353at 379.579 kb on - strand, within MIT1002_00353at 379.637 kb on + strand, within MIT1002_00353at 379.645 kb on - strand, within MIT1002_00353at 379.650 kb on - strand, within MIT1002_00353at 379.737 kb on + strand, within MIT1002_00353at 379.834 kb on - strand, within MIT1002_00353at 379.856 kb on + strand, within MIT1002_00353at 380.004 kb on + strand, within MIT1002_00353at 380.079 kb on - strand, within MIT1002_00353at 380.081 kb on - strand, within MIT1002_00353at 380.136 kb on + strand, within MIT1002_00353at 380.144 kb on - strand, within MIT1002_00353at 380.268 kb on - strand, within MIT1002_00353at 380.268 kb on - strand, within MIT1002_00353at 380.270 kb on + strand, within MIT1002_00353

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
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377,061 - MIT1002_00351 0.22 -3.8
377,066 + MIT1002_00351 0.22 -4.1
377,076 + MIT1002_00351 0.23 -2.0
377,086 + MIT1002_00351 0.24 -4.6
377,091 - MIT1002_00351 0.25 -4.8
377,094 - MIT1002_00351 0.25 -3.3
377,119 + MIT1002_00351 0.27 -4.1
377,152 + MIT1002_00351 0.31 -4.2
377,218 - MIT1002_00351 0.37 -1.4
377,233 - MIT1002_00351 0.38 -4.0
377,246 + MIT1002_00351 0.40 -3.1
377,254 - MIT1002_00351 0.40 -1.9
377,306 - MIT1002_00351 0.45 -4.4
377,365 + MIT1002_00351 0.51 -3.6
377,425 + MIT1002_00351 0.57 -1.8
377,460 + MIT1002_00351 0.60 -4.3
377,468 - MIT1002_00351 0.61 -3.6
377,468 - MIT1002_00351 0.61 -5.0
377,468 - MIT1002_00351 0.61 -1.9
377,468 - MIT1002_00351 0.61 -5.1
377,483 - MIT1002_00351 0.63 -3.5
377,518 + MIT1002_00351 0.66 -2.6
377,526 - MIT1002_00351 0.67 -2.0
377,648 + MIT1002_00351 0.78 -5.2
377,648 + MIT1002_00351 0.78 -3.1
377,648 + MIT1002_00351 0.78 -3.1
377,651 + MIT1002_00351 0.79 -3.4
377,703 - MIT1002_00351 0.84 -2.9
377,831 - -2.2
377,833 + -2.3
377,848 + +0.3
377,848 + -0.1
377,848 + -1.2
377,848 + -0.5
377,848 + +0.6
377,848 + -0.6
377,848 + -0.2
377,853 + -0.4
377,853 + -2.0
377,854 - -4.9
377,856 - -1.5
377,856 - -0.9
377,856 - -0.8
377,856 - -1.4
377,858 + -1.1
377,995 + +1.9
378,006 - -1.1
378,008 + -1.9
378,030 - -0.8
378,094 + +1.4
378,094 + -2.5
378,094 + +1.6
378,096 + -0.4
378,096 + -1.2
378,102 - -0.3
378,102 - +4.2
378,104 + +0.2
378,113 + +0.3
378,194 - MIT1002_00352 0.13 +0.5
378,339 + MIT1002_00352 0.24 +0.5
378,491 + MIT1002_00352 0.37 -3.5
378,645 - MIT1002_00352 0.49 -0.5
378,651 + MIT1002_00352 0.50 -1.9
378,658 - MIT1002_00352 0.50 +1.5
378,676 + MIT1002_00352 0.52 +0.7
378,678 - MIT1002_00352 0.52 +0.1
378,678 - MIT1002_00352 0.52 +0.3
378,678 - MIT1002_00352 0.52 +0.3
378,718 + MIT1002_00352 0.55 -0.6
378,723 + MIT1002_00352 0.55 -1.3
378,731 - MIT1002_00352 0.56 -1.5
378,731 - MIT1002_00352 0.56 -0.7
378,760 + MIT1002_00352 0.58 -1.2
378,768 - MIT1002_00352 0.59 -0.7
378,768 - MIT1002_00352 0.59 -2.3
378,783 - MIT1002_00352 0.60 +1.2
378,820 + MIT1002_00352 0.63 +0.6
378,847 + MIT1002_00352 0.65 +0.1
378,847 + MIT1002_00352 0.65 +0.3
378,847 + MIT1002_00352 0.65 -2.7
378,847 + MIT1002_00352 0.65 +0.7
378,855 - MIT1002_00352 0.66 -0.4
378,855 - MIT1002_00352 0.66 -0.9
378,903 - MIT1002_00352 0.70 -1.4
378,905 + MIT1002_00352 0.70 -0.4
378,913 - MIT1002_00352 0.71 +0.2
378,920 + MIT1002_00352 0.71 +0.1
378,928 - MIT1002_00352 0.72 +1.0
378,983 - MIT1002_00352 0.76 +1.0
379,023 + MIT1002_00352 0.80 -1.4
379,023 + MIT1002_00352 0.80 -1.4
379,031 - MIT1002_00352 0.80 -0.3
379,031 - MIT1002_00352 0.80 +0.5
379,031 - MIT1002_00352 0.80 -1.6
379,031 - MIT1002_00352 0.80 -1.3
379,031 - MIT1002_00352 0.80 +0.1
379,033 + MIT1002_00352 0.80 +0.2
379,033 + MIT1002_00352 0.80 -0.6
379,041 - MIT1002_00352 0.81 +1.1
379,041 - MIT1002_00352 0.81 +0.3
379,041 - MIT1002_00352 0.81 +0.2
379,050 + MIT1002_00352 0.82 -0.7
379,116 + MIT1002_00352 0.87 -0.1
379,144 + MIT1002_00352 0.89 -1.1
379,144 + MIT1002_00352 0.89 -0.8
379,219 + -0.8
379,219 + +0.2
379,257 + -0.9
379,257 + +0.1
379,257 + +0.7
379,257 + -0.1
379,257 + +2.7
379,257 + -1.5
379,265 - +0.0
379,265 - +0.3
379,265 - +0.5
379,265 - -1.5
379,265 - -3.0
379,265 - -1.6
379,265 - -3.2
379,334 + -2.2
379,342 - -3.0
379,342 - -3.0
379,414 - -3.7
379,438 - MIT1002_00353 0.10 -2.8
379,579 - MIT1002_00353 0.20 -2.8
379,579 - MIT1002_00353 0.20 -3.3
379,637 + MIT1002_00353 0.24 -1.6
379,645 - MIT1002_00353 0.24 -3.1
379,650 - MIT1002_00353 0.24 -3.5
379,737 + MIT1002_00353 0.30 -3.8
379,834 - MIT1002_00353 0.36 -3.7
379,856 + MIT1002_00353 0.38 -2.7
380,004 + MIT1002_00353 0.48 -3.0
380,079 - MIT1002_00353 0.53 -2.3
380,081 - MIT1002_00353 0.53 -1.7
380,136 + MIT1002_00353 0.56 -2.5
380,144 - MIT1002_00353 0.57 -1.5
380,268 - MIT1002_00353 0.65 -3.2
380,268 - MIT1002_00353 0.65 -3.6
380,270 + MIT1002_00353 0.65 -0.3

Or see this region's nucleotide sequence