Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00072 and MIT1002_00073 are separated by 103 nucleotides MIT1002_00073 and MIT1002_00074 are separated by 264 nucleotides MIT1002_00074 and MIT1002_00075 are separated by 17 nucleotides MIT1002_00075 and MIT1002_00076 overlap by 11 nucleotides MIT1002_00076 and MIT1002_00077 are separated by 300 nucleotides
MIT1002_00072: MIT1002_00072 - Bacteriophytochrome cph2, at 76,955 to 79,555
_00072
MIT1002_00073: MIT1002_00073 - Cytochrome c5, at 79,659 to 80,066
_00073
MIT1002_00074: MIT1002_00074 - tRNA-Arg, at 80,331 to 80,407
_00074
MIT1002_00075: MIT1002_00075 - putative DNA-binding transcriptional regulator, at 80,425 to 81,618
_00075
MIT1002_00076: MIT1002_00076 - transcriptional regulator, y4mF family, at 81,608 to 81,898
_00076
MIT1002_00077: MIT1002_00077 - Malate-2H(+)/Na(+)-lactate antiporter, at 82,199 to 83,611
_00077
Position (kb) 80
81
82 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 79.431 kb on - strand at 79.447 kb on + strand at 79.463 kb on - strand at 79.498 kb on + strand at 79.506 kb on - strand at 79.721 kb on - strand, within MIT1002_00073 at 79.742 kb on + strand, within MIT1002_00073 at 79.742 kb on + strand, within MIT1002_00073 at 79.798 kb on - strand, within MIT1002_00073 at 79.903 kb on - strand, within MIT1002_00073 at 80.116 kb on - strand at 80.166 kb on + strand at 80.230 kb on - strand at 80.235 kb on - strand at 80.257 kb on + strand at 80.259 kb on + strand at 80.301 kb on + strand at 80.351 kb on - strand, within MIT1002_00074 at 80.351 kb on - strand, within MIT1002_00074 at 80.365 kb on + strand, within MIT1002_00074 at 80.368 kb on - strand, within MIT1002_00074 at 80.376 kb on + strand, within MIT1002_00074 at 80.376 kb on + strand, within MIT1002_00074 at 80.400 kb on - strand at 80.400 kb on - strand at 80.432 kb on + strand at 80.441 kb on - strand at 80.442 kb on + strand at 80.456 kb on + strand at 80.512 kb on + strand at 80.578 kb on - strand, within MIT1002_00075 at 80.578 kb on - strand, within MIT1002_00075 at 80.578 kb on - strand, within MIT1002_00075 at 80.659 kb on + strand, within MIT1002_00075 at 80.659 kb on + strand, within MIT1002_00075 at 80.665 kb on - strand, within MIT1002_00075 at 80.735 kb on - strand, within MIT1002_00075 at 80.735 kb on - strand, within MIT1002_00075 at 80.743 kb on - strand, within MIT1002_00075 at 80.765 kb on + strand, within MIT1002_00075 at 80.765 kb on + strand, within MIT1002_00075 at 80.773 kb on - strand, within MIT1002_00075 at 80.783 kb on - strand, within MIT1002_00075 at 80.801 kb on - strand, within MIT1002_00075 at 80.801 kb on - strand, within MIT1002_00075 at 80.809 kb on - strand, within MIT1002_00075 at 80.853 kb on + strand, within MIT1002_00075 at 80.976 kb on + strand, within MIT1002_00075 at 80.976 kb on + strand, within MIT1002_00075 at 80.976 kb on + strand, within MIT1002_00075 at 80.984 kb on - strand, within MIT1002_00075 at 80.984 kb on - strand, within MIT1002_00075 at 80.984 kb on - strand, within MIT1002_00075 at 81.002 kb on - strand, within MIT1002_00075 at 81.052 kb on + strand, within MIT1002_00075 at 81.060 kb on + strand, within MIT1002_00075 at 81.078 kb on - strand, within MIT1002_00075 at 81.121 kb on - strand, within MIT1002_00075 at 81.131 kb on + strand, within MIT1002_00075 at 81.181 kb on - strand, within MIT1002_00075 at 81.242 kb on - strand, within MIT1002_00075 at 81.266 kb on + strand, within MIT1002_00075 at 81.291 kb on + strand, within MIT1002_00075 at 81.303 kb on + strand, within MIT1002_00075 at 81.305 kb on - strand, within MIT1002_00075 at 81.311 kb on - strand, within MIT1002_00075 at 81.311 kb on - strand, within MIT1002_00075 at 81.342 kb on + strand, within MIT1002_00075 at 81.350 kb on - strand, within MIT1002_00075 at 81.397 kb on + strand, within MIT1002_00075 at 81.423 kb on + strand, within MIT1002_00075 at 81.470 kb on + strand, within MIT1002_00075 at 81.486 kb on + strand, within MIT1002_00075 at 81.598 kb on + strand at 81.606 kb on + strand at 81.606 kb on + strand at 81.659 kb on + strand, within MIT1002_00076 at 81.769 kb on + strand, within MIT1002_00076 at 81.811 kb on + strand, within MIT1002_00076 at 81.812 kb on + strand, within MIT1002_00076 at 81.820 kb on + strand, within MIT1002_00076 at 81.829 kb on + strand, within MIT1002_00076 at 82.032 kb on + strand at 82.045 kb on + strand at 82.045 kb on + strand at 82.102 kb on + strand at 82.102 kb on + strand at 82.102 kb on + strand at 82.102 kb on + strand at 82.102 kb on + strand at 82.102 kb on + strand at 82.107 kb on + strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.110 kb on - strand at 82.117 kb on + strand at 82.235 kb on - strand at 82.296 kb on + strand at 82.310 kb on - strand at 82.369 kb on - strand, within MIT1002_00077 at 82.408 kb on - strand, within MIT1002_00077 at 82.413 kb on - strand, within MIT1002_00077 at 82.413 kb on - strand, within MIT1002_00077 at 82.445 kb on + strand, within MIT1002_00077 at 82.512 kb on + strand, within MIT1002_00077 at 82.527 kb on - strand, within MIT1002_00077 at 82.569 kb on - strand, within MIT1002_00077 at 82.572 kb on + strand, within MIT1002_00077 at 82.610 kb on - strand, within MIT1002_00077 at 82.613 kb on + strand, within MIT1002_00077 at 82.616 kb on - strand, within MIT1002_00077 at 82.616 kb on - strand, within MIT1002_00077
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 79,431 - +1.0 79,447 + +1.1 79,463 - -0.4 79,498 + +0.5 79,506 - +0.1 79,721 - MIT1002_00073 0.15 -0.0 79,742 + MIT1002_00073 0.20 -1.9 79,742 + MIT1002_00073 0.20 +0.5 79,798 - MIT1002_00073 0.34 -2.5 79,903 - MIT1002_00073 0.60 -0.9 80,116 - -1.3 80,166 + +0.0 80,230 - +0.8 80,235 - -0.5 80,257 + -0.5 80,259 + -0.1 80,301 + +0.5 80,351 - MIT1002_00074 0.26 -1.8 80,351 - MIT1002_00074 0.26 -2.5 80,365 + MIT1002_00074 0.44 -2.7 80,368 - MIT1002_00074 0.48 -1.9 80,376 + MIT1002_00074 0.58 -1.3 80,376 + MIT1002_00074 0.58 -1.4 80,400 - -2.5 80,400 - -2.9 80,432 + -0.6 80,441 - +0.0 80,442 + -0.8 80,456 + +0.7 80,512 + -2.0 80,578 - MIT1002_00075 0.13 -0.9 80,578 - MIT1002_00075 0.13 +0.6 80,578 - MIT1002_00075 0.13 +1.3 80,659 + MIT1002_00075 0.20 -0.7 80,659 + MIT1002_00075 0.20 -0.0 80,665 - MIT1002_00075 0.20 +1.2 80,735 - MIT1002_00075 0.26 -2.8 80,735 - MIT1002_00075 0.26 -0.3 80,743 - MIT1002_00075 0.27 +1.1 80,765 + MIT1002_00075 0.28 +1.1 80,765 + MIT1002_00075 0.28 -1.3 80,773 - MIT1002_00075 0.29 -0.1 80,783 - MIT1002_00075 0.30 +0.6 80,801 - MIT1002_00075 0.31 +0.3 80,801 - MIT1002_00075 0.31 +0.5 80,809 - MIT1002_00075 0.32 +0.5 80,853 + MIT1002_00075 0.36 +0.1 80,976 + MIT1002_00075 0.46 +1.1 80,976 + MIT1002_00075 0.46 -1.1 80,976 + MIT1002_00075 0.46 -0.2 80,984 - MIT1002_00075 0.47 +2.1 80,984 - MIT1002_00075 0.47 -0.1 80,984 - MIT1002_00075 0.47 -0.3 81,002 - MIT1002_00075 0.48 +0.3 81,052 + MIT1002_00075 0.53 -0.5 81,060 + MIT1002_00075 0.53 +2.2 81,078 - MIT1002_00075 0.55 -1.3 81,121 - MIT1002_00075 0.58 +0.2 81,131 + MIT1002_00075 0.59 -1.1 81,181 - MIT1002_00075 0.63 +1.8 81,242 - MIT1002_00075 0.68 +0.1 81,266 + MIT1002_00075 0.70 +0.0 81,291 + MIT1002_00075 0.73 -0.1 81,303 + MIT1002_00075 0.74 +0.7 81,305 - MIT1002_00075 0.74 +1.1 81,311 - MIT1002_00075 0.74 -0.4 81,311 - MIT1002_00075 0.74 -1.3 81,342 + MIT1002_00075 0.77 +0.3 81,350 - MIT1002_00075 0.77 +2.4 81,397 + MIT1002_00075 0.81 +0.2 81,423 + MIT1002_00075 0.84 +1.2 81,470 + MIT1002_00075 0.88 -0.1 81,486 + MIT1002_00075 0.89 +1.1 81,598 + -1.3 81,606 + +0.4 81,606 + +0.2 81,659 + MIT1002_00076 0.18 -2.1 81,769 + MIT1002_00076 0.55 -4.2 81,811 + MIT1002_00076 0.70 -2.6 81,812 + MIT1002_00076 0.70 -3.0 81,820 + MIT1002_00076 0.73 -0.5 81,829 + MIT1002_00076 0.76 -2.0 82,032 + -0.0 82,045 + +0.6 82,045 + +0.0 82,102 + -1.4 82,102 + -0.4 82,102 + +0.3 82,102 + +0.2 82,102 + +0.4 82,102 + -0.0 82,107 + -0.1 82,110 - -0.2 82,110 - -0.8 82,110 - +0.7 82,110 - -1.9 82,110 - +0.2 82,110 - +0.2 82,110 - +0.3 82,110 - +1.6 82,110 - -0.4 82,110 - -1.0 82,110 - +0.2 82,110 - +0.6 82,110 - -1.1 82,110 - +1.6 82,117 + +1.5 82,235 - +0.8 82,296 + +1.2 82,310 - -0.2 82,369 - MIT1002_00077 0.12 +1.1 82,408 - MIT1002_00077 0.15 -1.9 82,413 - MIT1002_00077 0.15 +0.6 82,413 - MIT1002_00077 0.15 +0.4 82,445 + MIT1002_00077 0.17 -0.4 82,512 + MIT1002_00077 0.22 +0.6 82,527 - MIT1002_00077 0.23 -3.0 82,569 - MIT1002_00077 0.26 -1.3 82,572 + MIT1002_00077 0.26 +1.4 82,610 - MIT1002_00077 0.29 +1.7 82,613 + MIT1002_00077 0.29 -0.1 82,616 - MIT1002_00077 0.30 +1.0 82,616 - MIT1002_00077 0.30 +0.1
Or see this region's nucleotide sequence