Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00053 and MIT1002_00054 are separated by 337 nucleotides MIT1002_00054 and MIT1002_00055 are separated by 11 nucleotides MIT1002_00055 and MIT1002_00056 are separated by 266 nucleotides MIT1002_00056 and MIT1002_00057 are separated by 0 nucleotides
MIT1002_00053: MIT1002_00053 - hypothetical protein, at 58,389 to 60,491
_00053
MIT1002_00054: MIT1002_00054 - 50S ribosomal protein L28, at 60,829 to 61,065
_00054
MIT1002_00055: MIT1002_00055 - 50S ribosomal protein L33, at 61,077 to 61,232
_00055
MIT1002_00056: MIT1002_00056 - hypothetical protein, at 61,499 to 61,963
_00056
MIT1002_00057: MIT1002_00057 - Formamidopyrimidine-DNA glycosylase, at 61,964 to 62,773
_00057
Position (kb) 61
62 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 60.105 kb on - strand, within MIT1002_00053 at 60.118 kb on + strand, within MIT1002_00053 at 60.126 kb on - strand, within MIT1002_00053 at 60.227 kb on - strand, within MIT1002_00053 at 60.254 kb on + strand, within MIT1002_00053 at 60.357 kb on - strand at 60.364 kb on + strand at 60.364 kb on + strand at 60.372 kb on - strand at 60.372 kb on - strand at 60.424 kb on + strand at 60.622 kb on - strand at 60.622 kb on - strand at 61.137 kb on - strand, within MIT1002_00055 at 61.248 kb on - strand at 61.302 kb on - strand at 61.352 kb on + strand at 61.352 kb on - strand at 61.352 kb on - strand at 61.378 kb on + strand at 61.494 kb on + strand at 61.562 kb on + strand, within MIT1002_00056 at 61.565 kb on - strand, within MIT1002_00056 at 61.567 kb on + strand, within MIT1002_00056 at 61.575 kb on - strand, within MIT1002_00056 at 61.581 kb on + strand, within MIT1002_00056 at 61.581 kb on + strand, within MIT1002_00056 at 61.581 kb on + strand, within MIT1002_00056 at 61.589 kb on - strand, within MIT1002_00056 at 61.589 kb on - strand, within MIT1002_00056 at 61.650 kb on - strand, within MIT1002_00056 at 61.764 kb on + strand, within MIT1002_00056 at 61.764 kb on + strand, within MIT1002_00056 at 61.764 kb on + strand, within MIT1002_00056 at 61.767 kb on - strand, within MIT1002_00056 at 61.772 kb on - strand, within MIT1002_00056 at 61.772 kb on - strand, within MIT1002_00056 at 61.772 kb on - strand, within MIT1002_00056 at 61.810 kb on + strand, within MIT1002_00056 at 61.818 kb on - strand, within MIT1002_00056 at 61.864 kb on - strand, within MIT1002_00056 at 61.885 kb on - strand, within MIT1002_00056 at 61.885 kb on - strand, within MIT1002_00056 at 61.917 kb on + strand at 61.924 kb on - strand at 61.925 kb on - strand at 61.966 kb on - strand at 62.067 kb on + strand, within MIT1002_00057 at 62.067 kb on + strand, within MIT1002_00057 at 62.081 kb on - strand, within MIT1002_00057 at 62.125 kb on - strand, within MIT1002_00057
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 4 remove 60,105 - MIT1002_00053 0.82 +1.0 60,118 + MIT1002_00053 0.82 +0.2 60,126 - MIT1002_00053 0.83 -0.3 60,227 - MIT1002_00053 0.87 +0.9 60,254 + MIT1002_00053 0.89 +1.8 60,357 - +2.1 60,364 + +1.4 60,364 + +0.1 60,372 - -0.2 60,372 - -0.6 60,424 + -0.7 60,622 - +0.2 60,622 - -0.5 61,137 - MIT1002_00055 0.38 -0.9 61,248 - -1.3 61,302 - -0.3 61,352 + +0.7 61,352 - -1.5 61,352 - +0.9 61,378 + -0.0 61,494 + +0.2 61,562 + MIT1002_00056 0.14 +1.0 61,565 - MIT1002_00056 0.14 +0.1 61,567 + MIT1002_00056 0.15 -0.2 61,575 - MIT1002_00056 0.16 +0.4 61,581 + MIT1002_00056 0.18 -0.6 61,581 + MIT1002_00056 0.18 -0.5 61,581 + MIT1002_00056 0.18 -0.2 61,589 - MIT1002_00056 0.19 +0.8 61,589 - MIT1002_00056 0.19 -0.3 61,650 - MIT1002_00056 0.32 -0.0 61,764 + MIT1002_00056 0.57 +1.1 61,764 + MIT1002_00056 0.57 +0.9 61,764 + MIT1002_00056 0.57 -0.9 61,767 - MIT1002_00056 0.58 -0.9 61,772 - MIT1002_00056 0.59 +1.2 61,772 - MIT1002_00056 0.59 -1.3 61,772 - MIT1002_00056 0.59 -0.5 61,810 + MIT1002_00056 0.67 -3.9 61,818 - MIT1002_00056 0.69 -0.9 61,864 - MIT1002_00056 0.78 +0.3 61,885 - MIT1002_00056 0.83 +1.0 61,885 - MIT1002_00056 0.83 -1.5 61,917 + -0.2 61,924 - +1.1 61,925 - +0.7 61,966 - -1.3 62,067 + MIT1002_00057 0.13 -0.9 62,067 + MIT1002_00057 0.13 -0.5 62,081 - MIT1002_00057 0.14 -0.8 62,125 - MIT1002_00057 0.20 +0.3
Or see this region's nucleotide sequence