Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS34625

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS34620 and QEN71_RS34625 are separated by 15 nucleotidesQEN71_RS34625 and QEN71_RS34630 are separated by 76 nucleotidesQEN71_RS34630 and QEN71_RS34635 are separated by 77 nucleotidesQEN71_RS34635 and QEN71_RS34640 are separated by 78 nucleotides QEN71_RS34620: QEN71_RS34620 - RHS repeat-associated core domain-containing protein, at 1,082,668 to 1,087,056 _RS34620 QEN71_RS34625: QEN71_RS34625 - hypothetical protein, at 1,087,072 to 1,087,347 _RS34625 QEN71_RS34630: QEN71_RS34630 - SymE family type I addiction module toxin, at 1,087,424 to 1,087,657 _RS34630 QEN71_RS34635: QEN71_RS34635 - helix-turn-helix transcriptional regulator, at 1,087,735 to 1,088,151 _RS34635 QEN71_RS34640: QEN71_RS34640 - IS66 family transposase, at 1,088,230 to 1,089,822 _RS34640 Position (kb) 1087 1088Strain fitness (log2 ratio) -2 -1 0 1at 1086.155 kb on - strand, within QEN71_RS34620at 1086.353 kb on - strand, within QEN71_RS34620at 1086.586 kb on + strand, within QEN71_RS34620at 1086.629 kb on - strandat 1086.629 kb on - strandat 1086.655 kb on - strandat 1086.836 kb on + strandat 1086.840 kb on + strandat 1086.841 kb on - strandat 1086.853 kb on + strandat 1086.991 kb on - strandat 1087.002 kb on - strandat 1087.047 kb on + strandat 1087.051 kb on + strandat 1087.174 kb on - strand, within QEN71_RS34625at 1087.258 kb on - strand, within QEN71_RS34625at 1087.287 kb on - strand, within QEN71_RS34625at 1087.576 kb on + strand, within QEN71_RS34630at 1087.736 kb on + strandat 1087.736 kb on + strandat 1087.737 kb on - strandat 1087.737 kb on - strandat 1088.007 kb on + strand, within QEN71_RS34635at 1088.157 kb on + strandat 1088.172 kb on + strandat 1088.173 kb on - strandat 1088.339 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,086,155 - QEN71_RS34620 0.79 -0.3
1,086,353 - QEN71_RS34620 0.84 -0.8
1,086,586 + QEN71_RS34620 0.89 -0.6
1,086,629 - -0.3
1,086,629 - -0.7
1,086,655 - -1.8
1,086,836 + +0.9
1,086,840 + -0.8
1,086,841 - -2.0
1,086,853 + +0.1
1,086,991 - +0.3
1,087,002 - -1.2
1,087,047 + +0.5
1,087,051 + +0.1
1,087,174 - QEN71_RS34625 0.37 +0.2
1,087,258 - QEN71_RS34625 0.67 +1.3
1,087,287 - QEN71_RS34625 0.78 -1.6
1,087,576 + QEN71_RS34630 0.65 -0.7
1,087,736 + -1.5
1,087,736 + -0.1
1,087,737 - -2.0
1,087,737 - +1.3
1,088,007 + QEN71_RS34635 0.65 -1.0
1,088,157 + +0.1
1,088,172 + -0.8
1,088,173 - -0.1
1,088,339 + -0.6

Or see this region's nucleotide sequence