Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS32015

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS32010 and QEN71_RS32015 overlap by 7 nucleotidesQEN71_RS32015 and QEN71_RS32020 are separated by 44 nucleotides QEN71_RS32010: QEN71_RS32010 - LysR substrate-binding domain-containing protein, at 532,873 to 533,790 _RS32010 QEN71_RS32015: QEN71_RS32015 - winged helix-turn-helix transcriptional regulator, at 533,784 to 534,281 _RS32015 QEN71_RS32020: QEN71_RS32020 - aspartate aminotransferase family protein, at 534,326 to 535,735 _RS32020 Position (kb) 533 534 535Strain fitness (log2 ratio) -2 -1 0 1 2at 532.804 kb on + strandat 532.804 kb on + strandat 532.804 kb on + strandat 532.811 kb on + strandat 532.816 kb on + strandat 532.816 kb on + strandat 532.816 kb on + strandat 532.816 kb on + strandat 532.817 kb on - strandat 532.817 kb on - strandat 532.817 kb on - strandat 532.836 kb on - strandat 532.862 kb on - strandat 532.976 kb on - strand, within QEN71_RS32010at 532.976 kb on - strand, within QEN71_RS32010at 533.129 kb on + strand, within QEN71_RS32010at 533.129 kb on + strand, within QEN71_RS32010at 533.130 kb on - strand, within QEN71_RS32010at 533.130 kb on - strand, within QEN71_RS32010at 533.196 kb on + strand, within QEN71_RS32010at 533.197 kb on - strand, within QEN71_RS32010at 533.392 kb on + strand, within QEN71_RS32010at 533.393 kb on - strand, within QEN71_RS32010at 533.393 kb on - strand, within QEN71_RS32010at 533.664 kb on + strand, within QEN71_RS32010at 533.665 kb on - strand, within QEN71_RS32010at 533.857 kb on + strand, within QEN71_RS32015at 533.858 kb on - strand, within QEN71_RS32015at 533.858 kb on - strand, within QEN71_RS32015at 533.866 kb on + strand, within QEN71_RS32015at 533.917 kb on + strand, within QEN71_RS32015at 533.917 kb on + strand, within QEN71_RS32015at 534.125 kb on + strand, within QEN71_RS32015at 534.125 kb on + strand, within QEN71_RS32015at 534.125 kb on + strand, within QEN71_RS32015at 534.126 kb on - strand, within QEN71_RS32015at 534.126 kb on - strand, within QEN71_RS32015at 534.126 kb on - strand, within QEN71_RS32015at 534.126 kb on - strand, within QEN71_RS32015at 534.126 kb on - strand, within QEN71_RS32015at 534.127 kb on + strand, within QEN71_RS32015at 534.127 kb on + strand, within QEN71_RS32015at 534.324 kb on + strandat 534.324 kb on + strandat 534.324 kb on + strandat 534.520 kb on - strand, within QEN71_RS32020at 534.723 kb on + strand, within QEN71_RS32020at 534.775 kb on - strand, within QEN71_RS32020at 534.831 kb on + strand, within QEN71_RS32020at 534.831 kb on + strand, within QEN71_RS32020at 534.831 kb on + strand, within QEN71_RS32020at 534.832 kb on - strand, within QEN71_RS32020at 534.832 kb on - strand, within QEN71_RS32020at 534.832 kb on - strand, within QEN71_RS32020at 534.832 kb on - strand, within QEN71_RS32020at 534.832 kb on - strand, within QEN71_RS32020at 534.832 kb on - strand, within QEN71_RS32020at 534.832 kb on - strand, within QEN71_RS32020at 534.871 kb on - strand, within QEN71_RS32020

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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532,804 + +1.6
532,804 + -0.0
532,804 + -0.0
532,811 + +0.6
532,816 + -0.7
532,816 + -0.1
532,816 + -0.8
532,816 + +0.4
532,817 - -0.8
532,817 - +1.6
532,817 - -2.3
532,836 - +0.3
532,862 - +0.8
532,976 - QEN71_RS32010 0.11 -0.3
532,976 - QEN71_RS32010 0.11 +0.7
533,129 + QEN71_RS32010 0.28 -0.6
533,129 + QEN71_RS32010 0.28 +0.4
533,130 - QEN71_RS32010 0.28 +0.5
533,130 - QEN71_RS32010 0.28 -0.9
533,196 + QEN71_RS32010 0.35 +0.3
533,197 - QEN71_RS32010 0.35 -0.8
533,392 + QEN71_RS32010 0.57 -2.0
533,393 - QEN71_RS32010 0.57 -0.3
533,393 - QEN71_RS32010 0.57 -0.2
533,664 + QEN71_RS32010 0.86 -0.2
533,665 - QEN71_RS32010 0.86 -0.1
533,857 + QEN71_RS32015 0.15 -0.4
533,858 - QEN71_RS32015 0.15 -1.7
533,858 - QEN71_RS32015 0.15 -1.0
533,866 + QEN71_RS32015 0.16 -0.4
533,917 + QEN71_RS32015 0.27 +0.4
533,917 + QEN71_RS32015 0.27 -0.0
534,125 + QEN71_RS32015 0.68 +0.4
534,125 + QEN71_RS32015 0.68 -0.2
534,125 + QEN71_RS32015 0.68 +0.7
534,126 - QEN71_RS32015 0.69 -0.0
534,126 - QEN71_RS32015 0.69 -0.5
534,126 - QEN71_RS32015 0.69 -0.5
534,126 - QEN71_RS32015 0.69 +1.0
534,126 - QEN71_RS32015 0.69 -0.3
534,127 + QEN71_RS32015 0.69 +0.3
534,127 + QEN71_RS32015 0.69 -0.0
534,324 + +0.0
534,324 + -0.3
534,324 + +0.3
534,520 - QEN71_RS32020 0.14 +1.0
534,723 + QEN71_RS32020 0.28 -0.0
534,775 - QEN71_RS32020 0.32 -0.2
534,831 + QEN71_RS32020 0.36 -0.3
534,831 + QEN71_RS32020 0.36 -0.0
534,831 + QEN71_RS32020 0.36 +1.1
534,832 - QEN71_RS32020 0.36 -0.6
534,832 - QEN71_RS32020 0.36 +0.0
534,832 - QEN71_RS32020 0.36 -0.2
534,832 - QEN71_RS32020 0.36 +0.7
534,832 - QEN71_RS32020 0.36 -0.0
534,832 - QEN71_RS32020 0.36 -1.6
534,832 - QEN71_RS32020 0.36 -0.0
534,871 - QEN71_RS32020 0.39 +2.0

Or see this region's nucleotide sequence