Experiment: L-Glutamic (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS30940 and QEN71_RS30945 overlap by 4 nucleotides QEN71_RS30945 and QEN71_RS30950 are separated by 0 nucleotides QEN71_RS30950 and QEN71_RS30955 are separated by 3 nucleotides QEN71_RS30955 and QEN71_RS30960 are separated by 8 nucleotides QEN71_RS30960 and QEN71_RS30965 overlap by 4 nucleotides
QEN71_RS30940: QEN71_RS30940 - hypothetical protein, at 291,596 to 292,165
_RS30940
QEN71_RS30945: QEN71_RS30945 - hypothetical protein, at 292,162 to 292,758
_RS30945
QEN71_RS30950: QEN71_RS30950 - secretin N-terminal domain-containing protein, at 292,759 to 295,050
_RS30950
QEN71_RS30955: QEN71_RS30955 - type II secretion system protein, at 295,054 to 295,623
_RS30955
QEN71_RS30960: QEN71_RS30960 - type II secretion system protein, at 295,632 to 296,024
_RS30960
QEN71_RS30965: QEN71_RS30965 - type II secretion system protein, at 296,021 to 296,641
_RS30965
Position (kb) 292
293
294
295
296 Strain fitness (log2 ratio) -1
0
1
2 at 291.945 kb on - strand, within QEN71_RS30940 at 291.945 kb on - strand, within QEN71_RS30940 at 291.945 kb on - strand, within QEN71_RS30940 at 291.974 kb on + strand, within QEN71_RS30940 at 291.974 kb on + strand, within QEN71_RS30940 at 291.993 kb on + strand, within QEN71_RS30940 at 291.993 kb on + strand, within QEN71_RS30940 at 291.993 kb on + strand, within QEN71_RS30940 at 292.555 kb on + strand, within QEN71_RS30945 at 292.561 kb on + strand, within QEN71_RS30945 at 292.561 kb on + strand, within QEN71_RS30945 at 292.653 kb on - strand, within QEN71_RS30945 at 292.706 kb on - strand at 293.038 kb on + strand, within QEN71_RS30950 at 293.078 kb on - strand, within QEN71_RS30950 at 293.191 kb on + strand, within QEN71_RS30950 at 293.192 kb on - strand, within QEN71_RS30950 at 293.560 kb on + strand, within QEN71_RS30950 at 293.590 kb on + strand, within QEN71_RS30950 at 293.590 kb on + strand, within QEN71_RS30950 at 293.706 kb on + strand, within QEN71_RS30950 at 293.893 kb on - strand, within QEN71_RS30950 at 294.103 kb on + strand, within QEN71_RS30950 at 294.106 kb on - strand, within QEN71_RS30950 at 294.122 kb on - strand, within QEN71_RS30950 at 294.122 kb on - strand, within QEN71_RS30950 at 294.612 kb on + strand, within QEN71_RS30950 at 294.612 kb on + strand, within QEN71_RS30950 at 294.760 kb on + strand, within QEN71_RS30950 at 294.761 kb on - strand, within QEN71_RS30950 at 294.873 kb on + strand at 295.046 kb on - strand at 295.261 kb on + strand, within QEN71_RS30955 at 295.261 kb on + strand, within QEN71_RS30955 at 295.261 kb on + strand, within QEN71_RS30955 at 295.262 kb on - strand, within QEN71_RS30955 at 295.263 kb on + strand, within QEN71_RS30955 at 295.264 kb on - strand, within QEN71_RS30955 at 295.264 kb on - strand, within QEN71_RS30955 at 295.279 kb on - strand, within QEN71_RS30955 at 295.418 kb on - strand, within QEN71_RS30955 at 295.738 kb on - strand, within QEN71_RS30960 at 295.738 kb on - strand, within QEN71_RS30960 at 295.873 kb on - strand, within QEN71_RS30960 at 295.960 kb on - strand, within QEN71_RS30960
Per-strain Table
Position Strand Gene LocusTag Fraction L-Glutamic (C) remove 291,945 - QEN71_RS30940 0.61 -0.0 291,945 - QEN71_RS30940 0.61 +0.7 291,945 - QEN71_RS30940 0.61 -0.2 291,974 + QEN71_RS30940 0.66 +0.7 291,974 + QEN71_RS30940 0.66 +2.3 291,993 + QEN71_RS30940 0.70 +0.6 291,993 + QEN71_RS30940 0.70 +0.0 291,993 + QEN71_RS30940 0.70 -0.1 292,555 + QEN71_RS30945 0.66 +0.4 292,561 + QEN71_RS30945 0.67 -0.6 292,561 + QEN71_RS30945 0.67 -0.0 292,653 - QEN71_RS30945 0.82 +1.4 292,706 - -0.5 293,038 + QEN71_RS30950 0.12 -1.1 293,078 - QEN71_RS30950 0.14 -0.2 293,191 + QEN71_RS30950 0.19 -0.1 293,192 - QEN71_RS30950 0.19 +0.7 293,560 + QEN71_RS30950 0.35 -0.3 293,590 + QEN71_RS30950 0.36 +0.5 293,590 + QEN71_RS30950 0.36 +0.1 293,706 + QEN71_RS30950 0.41 +0.3 293,893 - QEN71_RS30950 0.49 -0.1 294,103 + QEN71_RS30950 0.59 -0.1 294,106 - QEN71_RS30950 0.59 -0.3 294,122 - QEN71_RS30950 0.59 -0.3 294,122 - QEN71_RS30950 0.59 +0.4 294,612 + QEN71_RS30950 0.81 -0.4 294,612 + QEN71_RS30950 0.81 -0.7 294,760 + QEN71_RS30950 0.87 -0.5 294,761 - QEN71_RS30950 0.87 +0.7 294,873 + -0.9 295,046 - +1.8 295,261 + QEN71_RS30955 0.36 -0.5 295,261 + QEN71_RS30955 0.36 -0.5 295,261 + QEN71_RS30955 0.36 +0.1 295,262 - QEN71_RS30955 0.36 -0.6 295,263 + QEN71_RS30955 0.37 +0.5 295,264 - QEN71_RS30955 0.37 -0.7 295,264 - QEN71_RS30955 0.37 -1.1 295,279 - QEN71_RS30955 0.39 -0.5 295,418 - QEN71_RS30955 0.64 -1.3 295,738 - QEN71_RS30960 0.27 -1.5 295,738 - QEN71_RS30960 0.27 +0.8 295,873 - QEN71_RS30960 0.61 -1.4 295,960 - QEN71_RS30960 0.83 +0.4
Or see this region's nucleotide sequence