Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS10455

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS10450 and QEN71_RS10455 are separated by 30 nucleotidesQEN71_RS10455 and QEN71_RS10460 are separated by 158 nucleotides QEN71_RS10450: QEN71_RS10450 - nitrate/nitrite transporter, at 2,317,047 to 2,318,309 _RS10450 QEN71_RS10455: QEN71_RS10455 - LysR family transcriptional regulator, at 2,318,340 to 2,319,263 _RS10455 QEN71_RS10460: QEN71_RS10460 - benzoate 1,2-dioxygenase large subunit, at 2,319,422 to 2,320,789 _RS10460 Position (kb) 2318 2319 2320Strain fitness (log2 ratio) -3 -2 -1 0 1at 2317.351 kb on - strand, within QEN71_RS10450at 2317.352 kb on + strand, within QEN71_RS10450at 2317.352 kb on + strand, within QEN71_RS10450at 2317.722 kb on + strand, within QEN71_RS10450at 2317.749 kb on - strand, within QEN71_RS10450at 2317.898 kb on + strand, within QEN71_RS10450at 2317.899 kb on - strand, within QEN71_RS10450at 2317.984 kb on + strand, within QEN71_RS10450at 2318.092 kb on - strand, within QEN71_RS10450at 2318.158 kb on + strand, within QEN71_RS10450at 2318.272 kb on - strandat 2318.307 kb on + strandat 2318.307 kb on + strandat 2318.398 kb on + strandat 2318.399 kb on - strandat 2318.525 kb on - strand, within QEN71_RS10455at 2318.525 kb on - strand, within QEN71_RS10455at 2318.603 kb on - strand, within QEN71_RS10455at 2318.606 kb on + strand, within QEN71_RS10455at 2318.606 kb on + strand, within QEN71_RS10455at 2318.796 kb on - strand, within QEN71_RS10455at 2318.796 kb on - strand, within QEN71_RS10455at 2318.960 kb on - strand, within QEN71_RS10455at 2318.960 kb on - strand, within QEN71_RS10455at 2319.167 kb on + strand, within QEN71_RS10455at 2319.316 kb on + strandat 2319.316 kb on + strandat 2319.316 kb on + strandat 2319.316 kb on + strandat 2319.316 kb on + strandat 2319.317 kb on - strandat 2319.329 kb on + strandat 2319.330 kb on - strandat 2319.585 kb on - strand, within QEN71_RS10460at 2319.790 kb on + strand, within QEN71_RS10460at 2320.044 kb on - strand, within QEN71_RS10460

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,317,351 - QEN71_RS10450 0.24 +0.5
2,317,352 + QEN71_RS10450 0.24 -2.3
2,317,352 + QEN71_RS10450 0.24 -1.0
2,317,722 + QEN71_RS10450 0.53 -0.2
2,317,749 - QEN71_RS10450 0.56 -0.7
2,317,898 + QEN71_RS10450 0.67 -0.0
2,317,899 - QEN71_RS10450 0.67 +0.8
2,317,984 + QEN71_RS10450 0.74 +0.4
2,318,092 - QEN71_RS10450 0.83 -0.2
2,318,158 + QEN71_RS10450 0.88 -0.7
2,318,272 - +1.4
2,318,307 + -0.2
2,318,307 + -0.5
2,318,398 + -0.5
2,318,399 - -0.0
2,318,525 - QEN71_RS10455 0.20 -3.3
2,318,525 - QEN71_RS10455 0.20 -0.2
2,318,603 - QEN71_RS10455 0.28 +1.3
2,318,606 + QEN71_RS10455 0.29 +1.6
2,318,606 + QEN71_RS10455 0.29 +0.0
2,318,796 - QEN71_RS10455 0.49 -0.8
2,318,796 - QEN71_RS10455 0.49 +0.4
2,318,960 - QEN71_RS10455 0.67 -1.2
2,318,960 - QEN71_RS10455 0.67 -1.6
2,319,167 + QEN71_RS10455 0.90 -0.1
2,319,316 + -0.3
2,319,316 + -0.1
2,319,316 + -0.2
2,319,316 + -0.3
2,319,316 + -1.7
2,319,317 - +0.3
2,319,329 + +0.2
2,319,330 - -1.0
2,319,585 - QEN71_RS10460 0.12 +1.3
2,319,790 + QEN71_RS10460 0.27 -0.3
2,320,044 - QEN71_RS10460 0.45 +0.7

Or see this region's nucleotide sequence