Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS09435

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS09430 and QEN71_RS09435 overlap by 4 nucleotidesQEN71_RS09435 and QEN71_RS09440 are separated by 14 nucleotides QEN71_RS09430: QEN71_RS09430 - ABC transporter ATP-binding protein, at 2,108,434 to 2,109,453 _RS09430 QEN71_RS09435: QEN71_RS09435 - dihydroxyacetone kinase subunit DhaL, at 2,109,450 to 2,110,085 _RS09435 QEN71_RS09440: QEN71_RS09440 - dihydroxyacetone kinase subunit DhaK, at 2,110,100 to 2,111,089 _RS09440 Position (kb) 2109 2110 2111Strain fitness (log2 ratio) -2 -1 0 1 2at 2108.612 kb on + strand, within QEN71_RS09430at 2108.612 kb on + strand, within QEN71_RS09430at 2108.612 kb on + strand, within QEN71_RS09430at 2108.613 kb on - strand, within QEN71_RS09430at 2108.613 kb on - strand, within QEN71_RS09430at 2108.613 kb on - strand, within QEN71_RS09430at 2108.683 kb on + strand, within QEN71_RS09430at 2108.683 kb on + strand, within QEN71_RS09430at 2108.684 kb on - strand, within QEN71_RS09430at 2108.692 kb on + strand, within QEN71_RS09430at 2108.692 kb on + strand, within QEN71_RS09430at 2108.805 kb on + strand, within QEN71_RS09430at 2108.806 kb on - strand, within QEN71_RS09430at 2109.004 kb on + strand, within QEN71_RS09430at 2109.004 kb on + strand, within QEN71_RS09430at 2109.005 kb on - strand, within QEN71_RS09430at 2109.005 kb on - strand, within QEN71_RS09430at 2109.005 kb on - strand, within QEN71_RS09430at 2109.005 kb on - strand, within QEN71_RS09430at 2109.005 kb on - strand, within QEN71_RS09430at 2109.289 kb on + strand, within QEN71_RS09430at 2109.418 kb on + strandat 2109.418 kb on + strandat 2109.419 kb on - strandat 2109.509 kb on + strandat 2109.510 kb on - strandat 2109.510 kb on - strandat 2109.557 kb on + strand, within QEN71_RS09435at 2109.557 kb on + strand, within QEN71_RS09435at 2109.557 kb on + strand, within QEN71_RS09435at 2109.558 kb on - strand, within QEN71_RS09435at 2109.558 kb on - strand, within QEN71_RS09435at 2110.183 kb on - strandat 2110.415 kb on + strand, within QEN71_RS09440at 2110.415 kb on + strand, within QEN71_RS09440at 2110.415 kb on + strand, within QEN71_RS09440at 2110.416 kb on - strand, within QEN71_RS09440at 2110.416 kb on - strand, within QEN71_RS09440at 2110.416 kb on - strand, within QEN71_RS09440at 2110.517 kb on + strand, within QEN71_RS09440at 2110.517 kb on + strand, within QEN71_RS09440at 2110.639 kb on + strand, within QEN71_RS09440at 2110.639 kb on + strand, within QEN71_RS09440at 2110.639 kb on + strand, within QEN71_RS09440at 2110.639 kb on + strand, within QEN71_RS09440at 2110.639 kb on + strand, within QEN71_RS09440at 2110.639 kb on + strand, within QEN71_RS09440at 2110.639 kb on + strand, within QEN71_RS09440at 2110.639 kb on + strand, within QEN71_RS09440at 2110.639 kb on + strand, within QEN71_RS09440at 2110.640 kb on - strand, within QEN71_RS09440at 2110.640 kb on - strand, within QEN71_RS09440at 2110.640 kb on - strand, within QEN71_RS09440at 2110.640 kb on - strand, within QEN71_RS09440at 2110.879 kb on + strand, within QEN71_RS09440at 2110.879 kb on + strand, within QEN71_RS09440at 2110.880 kb on - strand, within QEN71_RS09440at 2110.898 kb on + strand, within QEN71_RS09440at 2110.898 kb on + strand, within QEN71_RS09440at 2110.898 kb on + strand, within QEN71_RS09440at 2110.898 kb on + strand, within QEN71_RS09440at 2110.899 kb on - strand, within QEN71_RS09440at 2110.899 kb on - strand, within QEN71_RS09440at 2110.899 kb on - strand, within QEN71_RS09440at 2111.062 kb on + strandat 2111.062 kb on + strandat 2111.062 kb on + strandat 2111.062 kb on + strandat 2111.063 kb on - strandat 2111.063 kb on - strandat 2111.063 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,108,612 + QEN71_RS09430 0.17 -0.4
2,108,612 + QEN71_RS09430 0.17 +1.4
2,108,612 + QEN71_RS09430 0.17 +0.4
2,108,613 - QEN71_RS09430 0.18 -2.6
2,108,613 - QEN71_RS09430 0.18 -0.2
2,108,613 - QEN71_RS09430 0.18 -1.2
2,108,683 + QEN71_RS09430 0.24 +1.1
2,108,683 + QEN71_RS09430 0.24 -0.4
2,108,684 - QEN71_RS09430 0.25 -0.2
2,108,692 + QEN71_RS09430 0.25 +0.5
2,108,692 + QEN71_RS09430 0.25 -0.5
2,108,805 + QEN71_RS09430 0.36 +1.1
2,108,806 - QEN71_RS09430 0.36 +0.1
2,109,004 + QEN71_RS09430 0.56 -0.2
2,109,004 + QEN71_RS09430 0.56 -0.8
2,109,005 - QEN71_RS09430 0.56 +0.2
2,109,005 - QEN71_RS09430 0.56 +1.0
2,109,005 - QEN71_RS09430 0.56 -0.5
2,109,005 - QEN71_RS09430 0.56 -0.6
2,109,005 - QEN71_RS09430 0.56 +0.2
2,109,289 + QEN71_RS09430 0.84 +0.4
2,109,418 + -0.3
2,109,418 + +0.8
2,109,419 - -2.1
2,109,509 + +2.0
2,109,510 - +0.5
2,109,510 - -0.2
2,109,557 + QEN71_RS09435 0.17 +1.6
2,109,557 + QEN71_RS09435 0.17 -0.3
2,109,557 + QEN71_RS09435 0.17 +0.8
2,109,558 - QEN71_RS09435 0.17 -0.3
2,109,558 - QEN71_RS09435 0.17 +0.9
2,110,183 - +0.3
2,110,415 + QEN71_RS09440 0.32 -0.7
2,110,415 + QEN71_RS09440 0.32 -0.3
2,110,415 + QEN71_RS09440 0.32 +0.2
2,110,416 - QEN71_RS09440 0.32 -0.2
2,110,416 - QEN71_RS09440 0.32 -0.4
2,110,416 - QEN71_RS09440 0.32 -0.3
2,110,517 + QEN71_RS09440 0.42 +0.4
2,110,517 + QEN71_RS09440 0.42 -0.8
2,110,639 + QEN71_RS09440 0.54 -0.8
2,110,639 + QEN71_RS09440 0.54 +0.2
2,110,639 + QEN71_RS09440 0.54 -1.3
2,110,639 + QEN71_RS09440 0.54 -0.7
2,110,639 + QEN71_RS09440 0.54 -1.4
2,110,639 + QEN71_RS09440 0.54 +0.3
2,110,639 + QEN71_RS09440 0.54 -0.3
2,110,639 + QEN71_RS09440 0.54 -1.9
2,110,639 + QEN71_RS09440 0.54 +0.8
2,110,640 - QEN71_RS09440 0.55 -0.8
2,110,640 - QEN71_RS09440 0.55 -0.4
2,110,640 - QEN71_RS09440 0.55 +1.1
2,110,640 - QEN71_RS09440 0.55 -0.9
2,110,879 + QEN71_RS09440 0.79 -0.7
2,110,879 + QEN71_RS09440 0.79 -1.0
2,110,880 - QEN71_RS09440 0.79 +0.8
2,110,898 + QEN71_RS09440 0.81 -1.3
2,110,898 + QEN71_RS09440 0.81 -0.1
2,110,898 + QEN71_RS09440 0.81 +0.8
2,110,898 + QEN71_RS09440 0.81 +0.2
2,110,899 - QEN71_RS09440 0.81 -0.3
2,110,899 - QEN71_RS09440 0.81 -0.2
2,110,899 - QEN71_RS09440 0.81 +1.1
2,111,062 + -1.2
2,111,062 + +0.7
2,111,062 + -1.3
2,111,062 + -0.6
2,111,063 - -0.5
2,111,063 - -0.1
2,111,063 - -1.2

Or see this region's nucleotide sequence