Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS07170

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS07165 and QEN71_RS07170 are separated by 105 nucleotidesQEN71_RS07170 and QEN71_RS07175 are separated by 511 nucleotides QEN71_RS07165: QEN71_RS07165 - tetratricopeptide repeat protein, at 1,592,783 to 1,594,012 _RS07165 QEN71_RS07170: QEN71_RS07170 - PspA/IM30 family protein, at 1,594,118 to 1,594,798 _RS07170 QEN71_RS07175: QEN71_RS07175 - hypothetical protein, at 1,595,310 to 1,595,966 _RS07175 Position (kb) 1594 1595Strain fitness (log2 ratio) -2 -1 0 1 2at 1593.156 kb on + strand, within QEN71_RS07165at 1593.463 kb on + strand, within QEN71_RS07165at 1593.611 kb on - strand, within QEN71_RS07165at 1593.662 kb on - strand, within QEN71_RS07165at 1593.671 kb on + strand, within QEN71_RS07165at 1593.819 kb on + strand, within QEN71_RS07165at 1593.819 kb on + strand, within QEN71_RS07165at 1593.819 kb on + strand, within QEN71_RS07165at 1593.820 kb on - strand, within QEN71_RS07165at 1593.820 kb on - strand, within QEN71_RS07165at 1593.825 kb on + strand, within QEN71_RS07165at 1593.825 kb on + strand, within QEN71_RS07165at 1593.825 kb on + strand, within QEN71_RS07165at 1593.825 kb on + strand, within QEN71_RS07165at 1593.825 kb on + strand, within QEN71_RS07165at 1593.825 kb on + strand, within QEN71_RS07165at 1593.825 kb on + strand, within QEN71_RS07165at 1593.826 kb on - strand, within QEN71_RS07165at 1593.826 kb on - strand, within QEN71_RS07165at 1593.826 kb on - strand, within QEN71_RS07165at 1593.826 kb on - strand, within QEN71_RS07165at 1593.826 kb on - strand, within QEN71_RS07165at 1594.050 kb on + strandat 1594.058 kb on + strandat 1594.059 kb on - strandat 1594.092 kb on - strandat 1594.092 kb on - strandat 1594.092 kb on - strandat 1594.092 kb on - strandat 1594.120 kb on - strandat 1594.349 kb on - strand, within QEN71_RS07170at 1594.349 kb on - strand, within QEN71_RS07170at 1594.587 kb on + strand, within QEN71_RS07170at 1594.587 kb on + strand, within QEN71_RS07170at 1594.587 kb on + strand, within QEN71_RS07170at 1594.587 kb on + strand, within QEN71_RS07170at 1594.587 kb on + strand, within QEN71_RS07170at 1594.587 kb on + strand, within QEN71_RS07170at 1594.587 kb on + strand, within QEN71_RS07170at 1594.587 kb on + strand, within QEN71_RS07170at 1594.588 kb on - strand, within QEN71_RS07170at 1594.588 kb on - strand, within QEN71_RS07170at 1594.588 kb on - strand, within QEN71_RS07170at 1594.588 kb on - strand, within QEN71_RS07170at 1594.588 kb on - strand, within QEN71_RS07170at 1594.588 kb on - strand, within QEN71_RS07170at 1594.588 kb on - strand, within QEN71_RS07170at 1594.588 kb on - strand, within QEN71_RS07170at 1594.588 kb on - strand, within QEN71_RS07170at 1594.588 kb on - strand, within QEN71_RS07170at 1594.852 kb on + strandat 1594.852 kb on + strandat 1594.853 kb on - strandat 1594.853 kb on - strandat 1594.853 kb on - strandat 1594.853 kb on - strandat 1594.869 kb on + strandat 1594.869 kb on + strandat 1594.869 kb on + strandat 1594.870 kb on - strandat 1594.875 kb on + strandat 1594.875 kb on + strandat 1594.875 kb on + strandat 1594.876 kb on - strandat 1594.876 kb on - strandat 1594.876 kb on - strandat 1594.876 kb on - strandat 1594.876 kb on - strandat 1594.881 kb on - strandat 1594.881 kb on - strandat 1595.000 kb on + strandat 1595.007 kb on - strandat 1595.016 kb on + strandat 1595.017 kb on - strandat 1595.017 kb on - strandat 1595.097 kb on - strandat 1595.099 kb on + strandat 1595.099 kb on + strandat 1595.099 kb on + strandat 1595.111 kb on - strandat 1595.111 kb on - strandat 1595.116 kb on + strandat 1595.116 kb on + strandat 1595.117 kb on - strandat 1595.127 kb on + strandat 1595.128 kb on - strandat 1595.128 kb on - strandat 1595.255 kb on + strandat 1595.256 kb on - strandat 1595.256 kb on - strandat 1595.256 kb on - strandat 1595.256 kb on - strandat 1595.263 kb on + strandat 1595.263 kb on + strandat 1595.263 kb on + strandat 1595.263 kb on + strandat 1595.263 kb on + strandat 1595.263 kb on + strandat 1595.263 kb on + strandat 1595.263 kb on + strandat 1595.264 kb on - strandat 1595.264 kb on - strandat 1595.264 kb on - strandat 1595.264 kb on - strandat 1595.264 kb on - strandat 1595.285 kb on + strandat 1595.285 kb on + strandat 1595.564 kb on + strand, within QEN71_RS07175at 1595.565 kb on - strand, within QEN71_RS07175at 1595.633 kb on + strand, within QEN71_RS07175at 1595.633 kb on + strand, within QEN71_RS07175at 1595.634 kb on - strand, within QEN71_RS07175at 1595.634 kb on - strand, within QEN71_RS07175at 1595.635 kb on - strand, within QEN71_RS07175

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,593,156 + QEN71_RS07165 0.30 -0.5
1,593,463 + QEN71_RS07165 0.55 +0.7
1,593,611 - QEN71_RS07165 0.67 -0.9
1,593,662 - QEN71_RS07165 0.71 -0.6
1,593,671 + QEN71_RS07165 0.72 -1.9
1,593,819 + QEN71_RS07165 0.84 -0.1
1,593,819 + QEN71_RS07165 0.84 +0.8
1,593,819 + QEN71_RS07165 0.84 +0.3
1,593,820 - QEN71_RS07165 0.84 +0.9
1,593,820 - QEN71_RS07165 0.84 +0.5
1,593,825 + QEN71_RS07165 0.85 -0.8
1,593,825 + QEN71_RS07165 0.85 -2.4
1,593,825 + QEN71_RS07165 0.85 +1.3
1,593,825 + QEN71_RS07165 0.85 -0.7
1,593,825 + QEN71_RS07165 0.85 -0.8
1,593,825 + QEN71_RS07165 0.85 +1.1
1,593,825 + QEN71_RS07165 0.85 -0.8
1,593,826 - QEN71_RS07165 0.85 -0.6
1,593,826 - QEN71_RS07165 0.85 +0.7
1,593,826 - QEN71_RS07165 0.85 +2.2
1,593,826 - QEN71_RS07165 0.85 +0.6
1,593,826 - QEN71_RS07165 0.85 -1.3
1,594,050 + +0.7
1,594,058 + +0.0
1,594,059 - -0.7
1,594,092 - +0.4
1,594,092 - +1.7
1,594,092 - +0.1
1,594,092 - -0.2
1,594,120 - -1.7
1,594,349 - QEN71_RS07170 0.34 -0.9
1,594,349 - QEN71_RS07170 0.34 +0.3
1,594,587 + QEN71_RS07170 0.69 -0.9
1,594,587 + QEN71_RS07170 0.69 +0.4
1,594,587 + QEN71_RS07170 0.69 +0.1
1,594,587 + QEN71_RS07170 0.69 +0.2
1,594,587 + QEN71_RS07170 0.69 -0.7
1,594,587 + QEN71_RS07170 0.69 -0.9
1,594,587 + QEN71_RS07170 0.69 +1.9
1,594,587 + QEN71_RS07170 0.69 +0.0
1,594,588 - QEN71_RS07170 0.69 -1.0
1,594,588 - QEN71_RS07170 0.69 +0.5
1,594,588 - QEN71_RS07170 0.69 -0.8
1,594,588 - QEN71_RS07170 0.69 +1.4
1,594,588 - QEN71_RS07170 0.69 +0.1
1,594,588 - QEN71_RS07170 0.69 +0.5
1,594,588 - QEN71_RS07170 0.69 -1.0
1,594,588 - QEN71_RS07170 0.69 +0.9
1,594,588 - QEN71_RS07170 0.69 +1.5
1,594,588 - QEN71_RS07170 0.69 -0.5
1,594,852 + +1.1
1,594,852 + -0.0
1,594,853 - -0.9
1,594,853 - -0.2
1,594,853 - +0.4
1,594,853 - -0.7
1,594,869 + +0.6
1,594,869 + +1.0
1,594,869 + -0.5
1,594,870 - -0.4
1,594,875 + +0.1
1,594,875 + +0.8
1,594,875 + +0.2
1,594,876 - +0.3
1,594,876 - -0.1
1,594,876 - +0.7
1,594,876 - +0.4
1,594,876 - -0.2
1,594,881 - -0.7
1,594,881 - -0.9
1,595,000 + -1.1
1,595,007 - -1.1
1,595,016 + -0.4
1,595,017 - -0.0
1,595,017 - +2.1
1,595,097 - +0.3
1,595,099 + -2.0
1,595,099 + +0.8
1,595,099 + +0.1
1,595,111 - +0.5
1,595,111 - +0.7
1,595,116 + +0.8
1,595,116 + +0.7
1,595,117 - +0.3
1,595,127 + -1.5
1,595,128 - +1.3
1,595,128 - +1.2
1,595,255 + -0.4
1,595,256 - +0.6
1,595,256 - +0.6
1,595,256 - +0.4
1,595,256 - -0.3
1,595,263 + +0.1
1,595,263 + -0.1
1,595,263 + +0.1
1,595,263 + -0.5
1,595,263 + -0.5
1,595,263 + -0.2
1,595,263 + +0.5
1,595,263 + -0.6
1,595,264 - -1.1
1,595,264 - -0.2
1,595,264 - -1.3
1,595,264 - +0.3
1,595,264 - -0.8
1,595,285 + -0.2
1,595,285 + -0.5
1,595,564 + QEN71_RS07175 0.39 +1.9
1,595,565 - QEN71_RS07175 0.39 +0.6
1,595,633 + QEN71_RS07175 0.49 +1.1
1,595,633 + QEN71_RS07175 0.49 -0.1
1,595,634 - QEN71_RS07175 0.49 -0.4
1,595,634 - QEN71_RS07175 0.49 +0.5
1,595,635 - QEN71_RS07175 0.49 +1.1

Or see this region's nucleotide sequence