Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS04890

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS04875 and QEN71_RS04880 are separated by 83 nucleotidesQEN71_RS04880 and QEN71_RS04885 are separated by 306 nucleotidesQEN71_RS04885 and QEN71_RS04890 are separated by 166 nucleotidesQEN71_RS04890 and QEN71_RS04895 are separated by 24 nucleotides QEN71_RS04875: QEN71_RS04875 - tRNA-Pro, at 1,067,769 to 1,067,845 _RS04875 QEN71_RS04880: QEN71_RS04880 - DUF3309 family protein, at 1,067,929 to 1,068,087 _RS04880 QEN71_RS04885: QEN71_RS04885 - hypothetical protein, at 1,068,394 to 1,068,567 _RS04885 QEN71_RS04890: QEN71_RS04890 - hypothetical protein, at 1,068,734 to 1,068,907 _RS04890 QEN71_RS04895: QEN71_RS04895 - MATE family efflux transporter, at 1,068,932 to 1,070,320 _RS04895 Position (kb) 1068 1069Strain fitness (log2 ratio) -2 -1 0 1 2at 1067.757 kb on - strandat 1067.863 kb on + strandat 1067.863 kb on + strandat 1067.899 kb on + strandat 1067.900 kb on - strandat 1067.932 kb on + strandat 1067.932 kb on + strandat 1067.932 kb on + strandat 1067.932 kb on + strandat 1067.932 kb on + strandat 1067.932 kb on + strandat 1067.932 kb on + strandat 1067.933 kb on - strandat 1067.933 kb on - strandat 1068.018 kb on - strand, within QEN71_RS04880at 1068.090 kb on + strandat 1068.090 kb on + strandat 1068.090 kb on + strandat 1068.090 kb on + strandat 1068.091 kb on - strandat 1068.091 kb on - strandat 1068.091 kb on - strandat 1068.091 kb on - strandat 1068.091 kb on - strandat 1068.091 kb on - strandat 1068.091 kb on - strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.100 kb on + strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.101 kb on - strandat 1068.102 kb on + strandat 1068.102 kb on + strandat 1068.102 kb on + strandat 1068.102 kb on + strandat 1068.102 kb on + strandat 1068.102 kb on + strandat 1068.102 kb on + strandat 1068.103 kb on - strandat 1068.103 kb on - strandat 1068.103 kb on - strandat 1068.172 kb on + strandat 1068.204 kb on + strandat 1068.204 kb on + strandat 1068.205 kb on - strandat 1068.205 kb on - strandat 1068.205 kb on - strandat 1068.205 kb on - strandat 1068.256 kb on - strandat 1068.479 kb on + strand, within QEN71_RS04885at 1068.479 kb on + strand, within QEN71_RS04885at 1068.479 kb on + strand, within QEN71_RS04885at 1068.479 kb on + strand, within QEN71_RS04885at 1068.479 kb on + strand, within QEN71_RS04885at 1068.479 kb on + strand, within QEN71_RS04885at 1068.479 kb on + strand, within QEN71_RS04885at 1068.526 kb on + strand, within QEN71_RS04885at 1068.527 kb on - strand, within QEN71_RS04885at 1068.527 kb on - strand, within QEN71_RS04885at 1068.527 kb on - strand, within QEN71_RS04885at 1068.527 kb on - strand, within QEN71_RS04885at 1068.527 kb on - strand, within QEN71_RS04885at 1068.527 kb on - strand, within QEN71_RS04885at 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.599 kb on + strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.600 kb on - strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.603 kb on + strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.604 kb on - strandat 1068.606 kb on + strandat 1068.606 kb on + strandat 1068.606 kb on + strandat 1068.606 kb on + strandat 1068.606 kb on + strandat 1068.607 kb on - strandat 1068.607 kb on - strandat 1068.733 kb on + strandat 1068.842 kb on + strand, within QEN71_RS04890at 1068.843 kb on - strand, within QEN71_RS04890at 1068.843 kb on - strand, within QEN71_RS04890at 1068.905 kb on + strandat 1068.906 kb on - strandat 1068.906 kb on - strandat 1068.906 kb on - strandat 1069.132 kb on + strand, within QEN71_RS04895at 1069.425 kb on + strand, within QEN71_RS04895at 1069.728 kb on + strand, within QEN71_RS04895at 1069.729 kb on - strand, within QEN71_RS04895at 1069.765 kb on + strand, within QEN71_RS04895at 1069.766 kb on - strand, within QEN71_RS04895at 1069.766 kb on - strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.833 kb on + strand, within QEN71_RS04895at 1069.834 kb on - strand, within QEN71_RS04895at 1069.834 kb on - strand, within QEN71_RS04895at 1069.834 kb on - strand, within QEN71_RS04895at 1069.834 kb on - strand, within QEN71_RS04895at 1069.834 kb on - strand, within QEN71_RS04895at 1069.834 kb on - strand, within QEN71_RS04895at 1069.834 kb on - strand, within QEN71_RS04895at 1069.878 kb on + strand, within QEN71_RS04895at 1069.878 kb on + strand, within QEN71_RS04895at 1069.878 kb on + strand, within QEN71_RS04895at 1069.879 kb on - strand, within QEN71_RS04895

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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1,067,757 - -1.7
1,067,863 + +1.5
1,067,863 + -0.6
1,067,899 + -0.0
1,067,900 - -1.4
1,067,932 + +0.1
1,067,932 + +1.3
1,067,932 + +0.2
1,067,932 + -0.4
1,067,932 + +0.2
1,067,932 + -0.1
1,067,932 + -0.2
1,067,933 - +0.4
1,067,933 - +0.6
1,068,018 - QEN71_RS04880 0.56 +0.7
1,068,090 + -0.3
1,068,090 + -0.7
1,068,090 + -0.6
1,068,090 + -0.3
1,068,091 - -0.6
1,068,091 - +0.6
1,068,091 - -0.2
1,068,091 - +0.8
1,068,091 - +0.8
1,068,091 - +1.1
1,068,091 - -2.2
1,068,100 + +0.0
1,068,100 + +2.5
1,068,100 + -0.2
1,068,100 + +0.9
1,068,100 + -0.2
1,068,100 + -0.1
1,068,100 + -0.3
1,068,100 + +0.5
1,068,100 + -0.9
1,068,100 + +1.5
1,068,100 + +0.4
1,068,100 + -1.1
1,068,100 + +0.2
1,068,100 + -0.5
1,068,101 - -1.3
1,068,101 - +0.0
1,068,101 - -0.1
1,068,101 - +1.2
1,068,101 - +0.4
1,068,101 - +0.5
1,068,101 - -0.3
1,068,101 - -1.4
1,068,101 - -1.8
1,068,101 - +0.7
1,068,101 - -1.5
1,068,101 - +0.8
1,068,101 - +0.8
1,068,101 - -0.5
1,068,101 - -0.9
1,068,101 - +1.9
1,068,102 + -0.6
1,068,102 + +1.1
1,068,102 + +0.2
1,068,102 + -1.0
1,068,102 + -0.8
1,068,102 + +1.3
1,068,102 + -0.4
1,068,103 - +0.6
1,068,103 - -0.6
1,068,103 - +0.0
1,068,172 + -0.4
1,068,204 + -0.9
1,068,204 + +0.0
1,068,205 - +1.1
1,068,205 - -0.1
1,068,205 - +0.3
1,068,205 - +0.9
1,068,256 - -0.3
1,068,479 + QEN71_RS04885 0.49 -0.4
1,068,479 + QEN71_RS04885 0.49 -0.6
1,068,479 + QEN71_RS04885 0.49 -0.5
1,068,479 + QEN71_RS04885 0.49 +0.1
1,068,479 + QEN71_RS04885 0.49 +0.3
1,068,479 + QEN71_RS04885 0.49 -0.2
1,068,479 + QEN71_RS04885 0.49 -0.4
1,068,526 + QEN71_RS04885 0.76 +0.6
1,068,527 - QEN71_RS04885 0.76 +0.9
1,068,527 - QEN71_RS04885 0.76 -0.8
1,068,527 - QEN71_RS04885 0.76 -1.0
1,068,527 - QEN71_RS04885 0.76 -0.1
1,068,527 - QEN71_RS04885 0.76 +1.5
1,068,527 - QEN71_RS04885 0.76 -1.9
1,068,599 + -0.8
1,068,599 + +0.7
1,068,599 + -0.1
1,068,599 + -1.1
1,068,599 + -0.5
1,068,599 + -1.3
1,068,599 + +0.1
1,068,599 + -0.9
1,068,599 + -0.5
1,068,599 + -0.4
1,068,599 + -0.9
1,068,599 + +0.5
1,068,599 + +0.2
1,068,599 + +1.5
1,068,599 + -0.4
1,068,599 + +0.8
1,068,599 + +0.2
1,068,600 - -1.4
1,068,600 - -0.1
1,068,600 - +2.2
1,068,600 - +0.2
1,068,600 - -0.2
1,068,600 - +0.5
1,068,600 - -0.9
1,068,600 - -1.4
1,068,600 - -0.7
1,068,600 - +0.1
1,068,600 - -0.8
1,068,600 - +0.5
1,068,603 + +1.3
1,068,603 + +0.6
1,068,603 + +0.1
1,068,603 + -0.3
1,068,603 + -0.2
1,068,603 + -0.1
1,068,603 + -0.2
1,068,603 + -0.2
1,068,603 + -1.3
1,068,603 + +0.7
1,068,603 + -0.9
1,068,603 + +1.9
1,068,603 + +0.2
1,068,603 + -1.1
1,068,603 + -0.4
1,068,603 + -0.6
1,068,603 + -0.0
1,068,603 + +0.2
1,068,603 + +0.2
1,068,603 + -0.4
1,068,603 + +0.0
1,068,603 + -0.1
1,068,603 + -1.6
1,068,603 + +1.1
1,068,603 + -0.4
1,068,603 + -0.1
1,068,603 + -0.5
1,068,604 - -0.4
1,068,604 - +0.6
1,068,604 - +0.8
1,068,604 - -1.4
1,068,604 - -0.0
1,068,604 - -0.5
1,068,604 - +0.5
1,068,604 - -1.1
1,068,604 - +0.3
1,068,604 - -1.4
1,068,604 - -1.4
1,068,604 - +0.9
1,068,604 - +1.4
1,068,604 - -0.1
1,068,606 + -1.8
1,068,606 + +0.5
1,068,606 + +0.4
1,068,606 + +0.4
1,068,606 + -0.4
1,068,607 - +0.4
1,068,607 - -1.2
1,068,733 + +0.8
1,068,842 + QEN71_RS04890 0.62 -1.6
1,068,843 - QEN71_RS04890 0.63 -1.0
1,068,843 - QEN71_RS04890 0.63 +1.3
1,068,905 + -1.6
1,068,906 - +0.7
1,068,906 - +0.9
1,068,906 - +0.0
1,069,132 + QEN71_RS04895 0.14 +0.3
1,069,425 + QEN71_RS04895 0.35 -0.6
1,069,728 + QEN71_RS04895 0.57 +0.4
1,069,729 - QEN71_RS04895 0.57 -0.1
1,069,765 + QEN71_RS04895 0.60 -0.4
1,069,766 - QEN71_RS04895 0.60 -1.5
1,069,766 - QEN71_RS04895 0.60 -0.1
1,069,833 + QEN71_RS04895 0.65 -1.0
1,069,833 + QEN71_RS04895 0.65 +0.5
1,069,833 + QEN71_RS04895 0.65 -1.1
1,069,833 + QEN71_RS04895 0.65 -0.1
1,069,833 + QEN71_RS04895 0.65 -0.6
1,069,833 + QEN71_RS04895 0.65 +0.9
1,069,833 + QEN71_RS04895 0.65 -0.6
1,069,833 + QEN71_RS04895 0.65 -0.6
1,069,833 + QEN71_RS04895 0.65 -0.9
1,069,833 + QEN71_RS04895 0.65 -0.6
1,069,833 + QEN71_RS04895 0.65 +0.9
1,069,833 + QEN71_RS04895 0.65 +1.5
1,069,833 + QEN71_RS04895 0.65 -1.5
1,069,833 + QEN71_RS04895 0.65 +1.5
1,069,833 + QEN71_RS04895 0.65 +0.4
1,069,834 - QEN71_RS04895 0.65 +0.4
1,069,834 - QEN71_RS04895 0.65 +0.1
1,069,834 - QEN71_RS04895 0.65 +0.4
1,069,834 - QEN71_RS04895 0.65 -0.0
1,069,834 - QEN71_RS04895 0.65 -1.5
1,069,834 - QEN71_RS04895 0.65 -1.0
1,069,834 - QEN71_RS04895 0.65 +0.1
1,069,878 + QEN71_RS04895 0.68 +1.7
1,069,878 + QEN71_RS04895 0.68 +0.5
1,069,878 + QEN71_RS04895 0.68 -0.8
1,069,879 - QEN71_RS04895 0.68 -0.2

Or see this region's nucleotide sequence