Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04101

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
4,601,954	+		MIT1002_04100	0.85	-0.4
4,602,000	+		MIT1002_04100	0.87	-0.8
4,602,008	-		MIT1002_04100	0.87	-1.7
4,602,008	-		MIT1002_04100	0.87	-0.3
4,602,018	-		MIT1002_04100	0.87	-2.8
4,602,019	+		MIT1002_04100	0.87	-0.7
4,602,091	+		MIT1002_04100	0.90	-2.4
4,602,096	+		MIT1002_04100	0.90	-0.8
4,602,288	-				+0.4
4,602,294	+				+0.3
4,602,333	+				-0.5
4,602,341	-				+2.8
4,602,401	+				-1.2
4,602,401	+				+0.3
4,602,401	+				-0.1
4,602,404	-				-0.3
4,602,419	-				+0.4
4,602,482	+				-1.2
4,602,482	-				-1.3
4,602,482	-				-2.3
4,602,482	-				+1.5
4,602,484	+				-2.0
4,602,507	+				+1.2
4,602,660	+				-0.6
4,602,660	+				+1.5
4,602,660	+				-0.9
4,602,660	+				-1.5
4,602,668	-				+0.7
4,602,668	-				-1.1
4,603,011	+				-3.1
4,603,055	+		MIT1002_04101	0.10	-1.7
4,603,063	-		MIT1002_04101	0.11	-0.7
4,603,063	-		MIT1002_04101	0.11	+0.1
4,603,064	-		MIT1002_04101	0.11	-1.0
4,603,122	-		MIT1002_04101	0.15	-0.5
4,603,309	+		MIT1002_04101	0.29	-1.2
4,603,316	+		MIT1002_04101	0.30	-0.9
4,603,385	+		MIT1002_04101	0.35	-1.1
4,603,449	+		MIT1002_04101	0.40	-2.4
4,603,534	+		MIT1002_04101	0.46	+0.8
4,603,534	+		MIT1002_04101	0.46	-0.5
4,603,540	+		MIT1002_04101	0.46	-3.0
4,603,542	-		MIT1002_04101	0.47	+1.0
4,603,587	+		MIT1002_04101	0.50	+0.2
4,603,595	-		MIT1002_04101	0.51	-2.0
4,603,595	-		MIT1002_04101	0.51	-2.6
4,603,595	-		MIT1002_04101	0.51	+0.4
4,603,595	-		MIT1002_04101	0.51	-2.8
4,603,642	-		MIT1002_04101	0.54	-0.7
4,603,675	+		MIT1002_04101	0.57	+1.1
4,603,695	+		MIT1002_04101	0.58	-1.3
4,603,695	-		MIT1002_04101	0.58	-3.0
4,603,756	-		MIT1002_04101	0.63	-0.8
4,603,771	+		MIT1002_04101	0.64	-0.1
4,603,820	+		MIT1002_04101	0.67	+0.2
4,603,846	-		MIT1002_04101	0.69	-2.7
4,603,886	-		MIT1002_04101	0.72	-1.1
4,604,038	-		MIT1002_04101	0.84	-1.2
4,604,171	+				+0.0
4,604,203	+				-1.1
4,604,203	+				-1.0
4,604,251	+				-0.7
4,604,342	-				-1.2
4,604,371	+				+1.6
4,604,391	+				+0.0
4,604,411	-				+0.2
4,604,560	-		MIT1002_04102	0.18	-0.4
4,604,604	-		MIT1002_04102	0.21	+2.1
4,604,606	+		MIT1002_04102	0.21	+0.0
4,604,614	-		MIT1002_04102	0.21	+0.9
4,604,616	+		MIT1002_04102	0.21	-0.2
4,604,624	-		MIT1002_04102	0.22	-0.2
4,604,636	-		MIT1002_04102	0.23	-0.2
4,604,658	+		MIT1002_04102	0.24	+0.4
4,604,663	+		MIT1002_04102	0.24	+0.6
4,604,663	+		MIT1002_04102	0.24	+0.9
4,604,671	-		MIT1002_04102	0.25	+0.0
4,604,706	-		MIT1002_04102	0.27	+0.1
4,604,802	-		MIT1002_04102	0.33	+1.7
4,604,860	-		MIT1002_04102	0.37	-0.3
4,604,897	-		MIT1002_04102	0.39	-0.3
4,604,922	+		MIT1002_04102	0.40	-0.4
4,604,927	+		MIT1002_04102	0.41	+2.0
4,604,927	+		MIT1002_04102	0.41	+2.8
4,604,966	-		MIT1002_04102	0.43	-1.7
4,604,988	+		MIT1002_04102	0.44	-2.3
4,604,996	-		MIT1002_04102	0.45	+0.4
4,604,996	-		MIT1002_04102	0.45	+1.3
4,604,996	-		MIT1002_04102	0.45	-0.2
4,604,996	-		MIT1002_04102	0.45	+0.8
4,604,996	-		MIT1002_04102	0.45	+0.1
4,604,996	-		MIT1002_04102	0.45	+0.4
4,605,074	+		MIT1002_04102	0.50	-0.2
4,605,107	-		MIT1002_04102	0.52	-0.6
4,605,107	-		MIT1002_04102	0.52	-0.1
4,605,109	-		MIT1002_04102	0.52	-0.2
4,605,207	+		MIT1002_04102	0.58	+0.7
4,605,215	-		MIT1002_04102	0.59	-0.7