Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_04092 and MIT1002_04093 are separated by 2 nucleotides MIT1002_04093 and MIT1002_04094 are separated by 57 nucleotides MIT1002_04094 and MIT1002_04095 are separated by 433 nucleotides
MIT1002_04092: MIT1002_04092 - putative type I restriction enzymeP M protein, at 4,590,799 to 4,592,343
_04092
MIT1002_04093: MIT1002_04093 - Type I restriction modification DNA specificity domain protein, at 4,592,346 to 4,592,945
_04093
MIT1002_04094: MIT1002_04094 - hypothetical protein, at 4,593,003 to 4,593,293
_04094
MIT1002_04095: MIT1002_04095 - hypothetical protein, at 4,593,727 to 4,593,960
_04095
Position (kb) 4592
4593 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 4591.350 kb on + strand, within MIT1002_04092 at 4591.358 kb on - strand, within MIT1002_04092 at 4591.448 kb on + strand, within MIT1002_04092 at 4591.490 kb on - strand, within MIT1002_04092 at 4591.534 kb on - strand, within MIT1002_04092 at 4591.656 kb on - strand, within MIT1002_04092 at 4591.744 kb on + strand, within MIT1002_04092 at 4591.868 kb on + strand, within MIT1002_04092 at 4591.883 kb on - strand, within MIT1002_04092 at 4591.955 kb on - strand, within MIT1002_04092 at 4591.980 kb on + strand, within MIT1002_04092 at 4592.027 kb on - strand, within MIT1002_04092 at 4592.027 kb on - strand, within MIT1002_04092 at 4592.064 kb on + strand, within MIT1002_04092 at 4592.072 kb on - strand, within MIT1002_04092 at 4592.148 kb on + strand, within MIT1002_04092 at 4592.171 kb on + strand, within MIT1002_04092 at 4592.181 kb on - strand, within MIT1002_04092 at 4592.226 kb on + strand at 4592.299 kb on - strand at 4592.347 kb on - strand at 4592.356 kb on + strand at 4592.654 kb on + strand, within MIT1002_04093 at 4592.862 kb on - strand, within MIT1002_04093 at 4592.901 kb on + strand at 4592.909 kb on - strand at 4592.909 kb on - strand at 4593.018 kb on - strand at 4593.029 kb on - strand at 4593.095 kb on - strand, within MIT1002_04094 at 4593.111 kb on + strand, within MIT1002_04094 at 4593.118 kb on + strand, within MIT1002_04094 at 4593.135 kb on + strand, within MIT1002_04094 at 4593.199 kb on - strand, within MIT1002_04094 at 4593.200 kb on - strand, within MIT1002_04094 at 4593.354 kb on + strand at 4593.371 kb on - strand at 4593.431 kb on + strand at 4593.431 kb on + strand at 4593.439 kb on - strand at 4593.447 kb on + strand at 4593.528 kb on + strand at 4593.536 kb on - strand at 4593.537 kb on - strand at 4593.612 kb on - strand at 4593.630 kb on + strand at 4593.796 kb on - strand, within MIT1002_04095 at 4593.814 kb on + strand, within MIT1002_04095 at 4593.835 kb on + strand, within MIT1002_04095 at 4593.835 kb on + strand, within MIT1002_04095 at 4593.849 kb on + strand, within MIT1002_04095 at 4593.849 kb on + strand, within MIT1002_04095
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 4,591,350 + MIT1002_04092 0.36 -1.7 4,591,358 - MIT1002_04092 0.36 -2.7 4,591,448 + MIT1002_04092 0.42 -2.9 4,591,490 - MIT1002_04092 0.45 -0.6 4,591,534 - MIT1002_04092 0.48 -2.2 4,591,656 - MIT1002_04092 0.55 -2.8 4,591,744 + MIT1002_04092 0.61 -3.0 4,591,868 + MIT1002_04092 0.69 -2.6 4,591,883 - MIT1002_04092 0.70 -1.9 4,591,955 - MIT1002_04092 0.75 -1.9 4,591,980 + MIT1002_04092 0.76 -1.2 4,592,027 - MIT1002_04092 0.79 -0.8 4,592,027 - MIT1002_04092 0.79 -2.5 4,592,064 + MIT1002_04092 0.82 +0.0 4,592,072 - MIT1002_04092 0.82 -2.1 4,592,148 + MIT1002_04092 0.87 -1.9 4,592,171 + MIT1002_04092 0.89 -2.6 4,592,181 - MIT1002_04092 0.89 -3.5 4,592,226 + -4.2 4,592,299 - -3.0 4,592,347 - -3.7 4,592,356 + -3.1 4,592,654 + MIT1002_04093 0.51 -1.6 4,592,862 - MIT1002_04093 0.86 -3.5 4,592,901 + -1.9 4,592,909 - -2.0 4,592,909 - -1.4 4,593,018 - +0.0 4,593,029 - -2.1 4,593,095 - MIT1002_04094 0.32 -0.1 4,593,111 + MIT1002_04094 0.37 -1.6 4,593,118 + MIT1002_04094 0.40 +0.3 4,593,135 + MIT1002_04094 0.45 -1.1 4,593,199 - MIT1002_04094 0.67 +1.2 4,593,200 - MIT1002_04094 0.68 +0.0 4,593,354 + -1.0 4,593,371 - +0.3 4,593,431 + -2.3 4,593,431 + -0.3 4,593,439 - -0.2 4,593,447 + -0.4 4,593,528 + +0.5 4,593,536 - +0.4 4,593,537 - -0.4 4,593,612 - +0.6 4,593,630 + +2.0 4,593,796 - MIT1002_04095 0.29 -2.0 4,593,814 + MIT1002_04095 0.37 -0.3 4,593,835 + MIT1002_04095 0.46 +0.5 4,593,835 + MIT1002_04095 0.46 +2.1 4,593,849 + MIT1002_04095 0.52 +1.6 4,593,849 + MIT1002_04095 0.52 -0.5
Or see this region's nucleotide sequence