Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04050

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
4,551,014	+		MIT1002_04049	0.75	+0.2
4,551,168	+		MIT1002_04049	0.79	+0.4
4,551,215	-		MIT1002_04049	0.81	+0.3
4,551,217	+		MIT1002_04049	0.81	-2.1
4,551,245	+		MIT1002_04049	0.81	+0.0
4,551,281	-		MIT1002_04049	0.82	+1.6
4,551,334	-		MIT1002_04049	0.84	-1.4
4,551,347	+		MIT1002_04049	0.84	-0.2
4,551,409	+		MIT1002_04049	0.86	-2.1
4,551,409	+		MIT1002_04049	0.86	+3.0
4,551,417	-		MIT1002_04049	0.86	-0.6
4,551,480	-		MIT1002_04049	0.88	+1.9
4,551,518	+		MIT1002_04049	0.89	-0.8
4,551,518	+		MIT1002_04049	0.89	-0.7
4,551,531	+		MIT1002_04049	0.89	-1.0
4,551,566	-		MIT1002_04049	0.90	+0.4
4,551,662	-				+0.0
4,551,675	+				+0.6
4,551,704	+				+1.1
4,551,810	+				-1.3
4,551,853	-				+0.8
4,551,886	-				-0.8
4,551,892	+				+0.3
4,551,923	+				+0.1
4,551,929	+				+1.4
4,551,937	-				-0.2
4,552,004	-				+0.0
4,552,004	-				+0.2
4,552,199	-		MIT1002_04050	0.31	-1.4
4,552,465	-		MIT1002_04050	0.74	-3.6
4,552,692	+		MIT1002_04051	0.15	-2.8
4,552,694	+		MIT1002_04051	0.15	-1.3
4,552,700	-		MIT1002_04051	0.16	+0.6
4,552,700	-		MIT1002_04051	0.16	+1.0
4,552,702	-		MIT1002_04051	0.17	+0.6
4,552,720	+		MIT1002_04051	0.20	-0.5
4,552,720	+		MIT1002_04051	0.20	-0.3
4,552,728	-		MIT1002_04051	0.22	+0.8
4,552,747	-		MIT1002_04051	0.25	+1.8
4,552,751	+		MIT1002_04051	0.26	-0.3
4,552,802	-		MIT1002_04051	0.36	+2.0
4,552,918	+		MIT1002_04051	0.59	-2.2
4,552,933	+		MIT1002_04051	0.62	-0.7
4,552,933	+		MIT1002_04051	0.62	-0.1
4,552,933	+		MIT1002_04051	0.62	+1.5
4,552,933	+		MIT1002_04051	0.62	+0.7
4,552,933	+		MIT1002_04051	0.62	+0.5
4,552,933	+		MIT1002_04051	0.62	+1.2
4,552,941	-		MIT1002_04051	0.64	+0.9
4,552,941	-		MIT1002_04051	0.64	-0.4
4,552,941	-		MIT1002_04051	0.64	+1.2
4,552,941	-		MIT1002_04051	0.64	+0.9
4,552,941	-		MIT1002_04051	0.64	+0.3
4,552,976	+		MIT1002_04051	0.71	+1.0
4,552,977	-		MIT1002_04051	0.71	-2.0
4,553,052	+		MIT1002_04051	0.86	+0.6
4,553,067	-		MIT1002_04051	0.89	+0.0
4,553,070	-		MIT1002_04051	0.89	-0.5
4,553,074	+				+1.0
4,553,074	+				+3.1
4,553,074	+				-0.8
4,553,074	+				-0.2
4,553,074	+				-1.2
4,553,074	+				-0.1
4,553,074	+				+1.4
4,553,082	-				+0.7
4,553,082	-				-1.3
4,553,082	-				-1.7
4,553,087	-				+2.0
4,553,087	-				-0.2
4,553,114	-				-2.4
4,553,264	+				-2.0
4,553,272	-				-0.9
4,553,308	-				+0.6
4,553,381	-		MIT1002_04052	0.17	-0.2
4,553,458	-		MIT1002_04052	0.45	-0.7
4,553,555	-		MIT1002_04052	0.80	-0.7