Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_04027

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
4,514,038	+		MIT1002_04025	0.46	-1.8
4,514,048	+		MIT1002_04025	0.48	-0.7
4,514,048	+		MIT1002_04025	0.48	+1.0
4,514,048	+		MIT1002_04025	0.48	+0.2
4,514,048	+		MIT1002_04025	0.48	-2.7
4,514,048	+		MIT1002_04025	0.48	+0.0
4,514,048	+		MIT1002_04025	0.48	+0.6
4,514,048	+		MIT1002_04025	0.48	+3.0
4,514,056	-		MIT1002_04025	0.49	+1.1
4,514,056	-		MIT1002_04025	0.49	+0.0
4,514,056	-		MIT1002_04025	0.49	+0.1
4,514,056	-		MIT1002_04025	0.49	-0.6
4,514,056	-		MIT1002_04025	0.49	-1.7
4,514,071	-		MIT1002_04025	0.52	-1.5
4,514,086	+		MIT1002_04025	0.54	-2.0
4,514,093	-		MIT1002_04025	0.55	-1.3
4,514,101	+		MIT1002_04025	0.57	+0.1
4,514,101	+		MIT1002_04025	0.57	-1.2
4,514,130	-		MIT1002_04025	0.62	+0.1
4,514,141	+		MIT1002_04025	0.63	-2.3
4,514,151	-		MIT1002_04025	0.65	+0.3
4,514,291	-		MIT1002_04025	0.89	-0.1
4,514,316	-				+0.1
4,514,368	+				-0.1
4,514,420	+				+0.1
4,514,420	-				-2.2
4,514,472	-		MIT1002_04026	0.18	-1.6
4,514,493	-		MIT1002_04026	0.21	-3.1
4,514,595	-		MIT1002_04026	0.37	-1.4
4,514,611	+		MIT1002_04026	0.39	-3.0
4,514,630	+		MIT1002_04026	0.42	-2.7
4,514,730	-		MIT1002_04026	0.58	-1.7
4,514,730	-		MIT1002_04026	0.58	-0.8
4,514,730	-		MIT1002_04026	0.58	-2.1
4,514,730	-		MIT1002_04026	0.58	-1.5
4,514,730	-		MIT1002_04026	0.58	-2.9
4,514,732	+		MIT1002_04026	0.58	-1.4
4,514,732	-		MIT1002_04026	0.58	-1.2
4,514,836	-		MIT1002_04026	0.74	-0.6
4,514,880	+		MIT1002_04026	0.81	-1.5
4,514,883	-		MIT1002_04026	0.82	-0.9
4,514,886	+		MIT1002_04026	0.82	+0.3
4,514,928	+		MIT1002_04026	0.89	-0.9
4,514,933	-		MIT1002_04026	0.89	-1.7
4,515,004	+				-1.3
4,515,012	-				-0.5
4,515,150	+		MIT1002_04027	0.17	-1.1
4,515,150	+		MIT1002_04027	0.17	-0.6
4,515,159	-		MIT1002_04027	0.18	-3.1
4,515,186	+		MIT1002_04027	0.20	-1.3
4,515,194	-		MIT1002_04027	0.21	-1.4
4,515,194	-		MIT1002_04027	0.21	-1.2
4,515,194	-		MIT1002_04027	0.21	-2.0
4,515,194	-		MIT1002_04027	0.21	-4.5
4,515,227	+		MIT1002_04027	0.25	-1.0
4,515,232	-		MIT1002_04027	0.25	+1.5
4,515,240	-		MIT1002_04027	0.26	-0.6
4,515,255	+		MIT1002_04027	0.28	+1.0
4,515,255	+		MIT1002_04027	0.28	-1.1
4,515,269	-		MIT1002_04027	0.30	+3.1
4,515,271	-		MIT1002_04027	0.30	-0.6
4,515,356	+		MIT1002_04027	0.39	-1.7
4,515,378	+		MIT1002_04027	0.41	-2.9
4,515,378	+		MIT1002_04027	0.41	-0.7
4,515,386	-		MIT1002_04027	0.42	-0.6
4,515,415	+		MIT1002_04027	0.45	+0.3
4,515,423	-		MIT1002_04027	0.46	-0.8
4,515,432	-		MIT1002_04027	0.47	-2.0
4,515,460	+		MIT1002_04027	0.50	-4.2
4,515,504	-		MIT1002_04027	0.55	-1.0
4,515,518	-		MIT1002_04027	0.57	-2.0
4,515,534	-		MIT1002_04027	0.58	-0.4
4,515,584	+		MIT1002_04027	0.64	-0.6
4,515,592	-		MIT1002_04027	0.65	+0.0
4,515,621	-		MIT1002_04027	0.68	-0.3
4,515,668	-		MIT1002_04027	0.73	-2.2
4,515,726	-		MIT1002_04027	0.79	-2.7
4,515,740	+		MIT1002_04027	0.81	-0.9
4,515,745	+		MIT1002_04027	0.81	-3.8
4,515,753	-		MIT1002_04027	0.82	-3.3
4,515,753	-		MIT1002_04027	0.82	-1.7
4,515,824	+				-1.6
4,515,832	-				+0.0
4,515,867	-				-0.5
4,515,869	-				-2.0
4,515,869	-				-1.2
4,515,871	+				-2.1
4,515,892	-				-1.1
4,515,899	-				-0.7
4,515,899	-				-0.7
4,515,923	+				-0.4
4,515,960	-				+0.5
4,515,962	+				-0.9
4,515,962	+				+0.8
4,515,974	+				-0.6
4,515,974	+				-3.2
4,515,979	-				-0.0
4,516,021	-				+0.1
4,516,132	-		MIT1002_04028	0.18	-1.7
4,516,198	-		MIT1002_04028	0.24	-2.5
4,516,284	+		MIT1002_04028	0.31	-1.4
4,516,290	-		MIT1002_04028	0.31	-1.6
4,516,292	-		MIT1002_04028	0.32	-0.3
4,516,292	-		MIT1002_04028	0.32	-1.9
4,516,331	+		MIT1002_04028	0.35	-2.1
4,516,331	+		MIT1002_04028	0.35	-3.2
4,516,331	+		MIT1002_04028	0.35	-2.5
4,516,339	-		MIT1002_04028	0.35	-0.9
4,516,339	-		MIT1002_04028	0.35	-2.3
4,516,362	+		MIT1002_04028	0.37	-4.1
4,516,417	-		MIT1002_04028	0.42	-1.3
4,516,472	+		MIT1002_04028	0.46	-1.0
4,516,480	-		MIT1002_04028	0.47	-2.2
4,516,539	-		MIT1002_04028	0.52	-2.1
4,516,555	+		MIT1002_04028	0.53	-1.3
4,516,588	-		MIT1002_04028	0.56	-2.8
4,516,610	+		MIT1002_04028	0.58	-1.7
4,516,772	+		MIT1002_04028	0.71	-2.6
4,516,780	-		MIT1002_04028	0.72	-2.1
4,516,876	-		MIT1002_04028	0.79	-2.0
4,516,882	+		MIT1002_04028	0.80	-1.9
4,516,890	-		MIT1002_04028	0.81	-1.2
4,516,890	-		MIT1002_04028	0.81	-1.0