Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03977

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
4,464,126	+		MIT1002_03976	0.65	-6.2
4,464,200	+		MIT1002_03976	0.68	-0.3
4,464,286	+		MIT1002_03976	0.72	-1.8
4,464,286	+		MIT1002_03976	0.72	-1.0
4,464,286	+		MIT1002_03976	0.72	-0.6
4,464,294	-		MIT1002_03976	0.73	-0.6
4,464,377	-		MIT1002_03976	0.77	-0.3
4,464,561	-		MIT1002_03976	0.86	-1.7
4,464,868	+				-1.2
4,464,961	-				-1.0
4,464,961	-				-0.6
4,464,961	-				-1.4
4,464,971	-				-0.6
4,465,142	-		MIT1002_03977	0.18	+0.0
4,465,160	+		MIT1002_03977	0.20	-2.3
4,465,376	-		MIT1002_03977	0.33	-1.7
4,465,447	-		MIT1002_03977	0.38	-3.6
4,465,509	-		MIT1002_03977	0.42	-2.1
4,465,672	+		MIT1002_03977	0.52	-0.8
4,465,716	+		MIT1002_03977	0.55	-3.6
4,465,716	+		MIT1002_03977	0.55	-0.3
4,465,719	-		MIT1002_03977	0.55	-1.3
4,465,824	+		MIT1002_03977	0.62	-1.0
4,465,840	+		MIT1002_03977	0.63	-2.1
4,465,848	-		MIT1002_03977	0.64	-2.5
4,465,870	+		MIT1002_03977	0.65	-0.8
4,465,986	-		MIT1002_03977	0.72	-1.3
4,465,994	-		MIT1002_03977	0.73	-0.3
4,466,035	-		MIT1002_03977	0.75	-1.0
4,466,362	+				-0.3
4,466,395	-				-0.8
4,466,475	+				-1.0
4,466,583	-		MIT1002_03978	0.13	-0.6
4,466,634	+		MIT1002_03978	0.18	-0.6
4,466,649	-		MIT1002_03978	0.19	-1.9
4,466,768	-		MIT1002_03978	0.28	-0.3
4,466,859	+		MIT1002_03978	0.36	-3.1
4,466,867	-		MIT1002_03978	0.37	+0.0
4,466,886	+		MIT1002_03978	0.38	-2.0
4,466,970	+		MIT1002_03978	0.45	-1.4
4,467,042	-		MIT1002_03978	0.51	-1.2
4,467,198	-		MIT1002_03978	0.63	-0.8
4,467,198	-		MIT1002_03978	0.63	-2.5
4,467,236	-		MIT1002_03978	0.67	-1.2
4,467,242	+		MIT1002_03978	0.67	-2.6
4,467,288	+		MIT1002_03978	0.71	-2.5
4,467,358	+		MIT1002_03978	0.77	-4.5
4,467,394	+		MIT1002_03978	0.79	-1.4
4,467,394	+		MIT1002_03978	0.79	-0.8