Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03925

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
4,400,376	+				+0.5
4,400,385	+				-1.1
4,400,445	+				+0.0
4,400,445	+				-1.4
4,400,453	-				+0.0
4,400,453	-				+0.4
4,400,455	-				+1.3
4,400,520	+				+0.7
4,400,520	+				-0.7
4,400,544	+				-0.6
4,400,544	+				-0.4
4,400,552	-				-0.1
4,400,552	-				-0.2
4,400,632	-				-1.2
4,400,632	-				+1.9
4,400,678	-		MIT1002_03924	0.19	-0.9
4,400,732	-		MIT1002_03924	0.29	-0.3
4,400,774	-		MIT1002_03924	0.38	-1.5
4,400,774	-		MIT1002_03924	0.38	-0.2
4,400,891	+		MIT1002_03924	0.60	-0.7
4,400,899	-		MIT1002_03924	0.62	+0.4
4,400,909	-		MIT1002_03924	0.64	-0.7
4,400,967	-		MIT1002_03924	0.75	-0.5
4,401,020	-		MIT1002_03924	0.86	+0.9
4,401,027	+		MIT1002_03924	0.87	+0.7
4,401,158	+				-1.5
4,401,158	+				+0.9
4,401,158	+				+2.0
4,401,166	-				+1.1
4,401,262	-				-2.1
4,401,280	+				+0.6
4,401,283	+				+0.8
4,401,361	-		MIT1002_03925	0.15	+0.3
4,401,425	+		MIT1002_03925	0.23	+9.0
4,401,601	+		MIT1002_03925	0.42	-0.3
4,401,601	+		MIT1002_03925	0.42	-1.2
4,401,623	-		MIT1002_03925	0.45	+0.3
4,401,787	+		MIT1002_03925	0.63	+0.4
4,401,799	+		MIT1002_03925	0.64	-1.8
4,401,806	-		MIT1002_03925	0.65	+1.1
4,401,807	-		MIT1002_03925	0.65	-1.9
4,401,831	+		MIT1002_03925	0.68	+0.7
4,401,831	+		MIT1002_03925	0.68	+0.7
4,401,832	-		MIT1002_03925	0.68	-1.0
4,401,832	-		MIT1002_03925	0.68	-0.9
4,401,836	+		MIT1002_03925	0.68	-2.4
4,401,836	+		MIT1002_03925	0.68	+0.6
4,401,836	+		MIT1002_03925	0.68	-0.0
4,401,836	+		MIT1002_03925	0.68	+0.6
4,401,836	+		MIT1002_03925	0.68	+1.1
4,401,836	+		MIT1002_03925	0.68	-0.1
4,401,836	+		MIT1002_03925	0.68	-0.7
4,401,836	+		MIT1002_03925	0.68	+0.3
4,401,836	+		MIT1002_03925	0.68	-0.3
4,401,836	+		MIT1002_03925	0.68	-1.1
4,401,836	+		MIT1002_03925	0.68	-2.0
4,401,836	+		MIT1002_03925	0.68	+0.0
4,401,836	+		MIT1002_03925	0.68	-0.6
4,401,836	+		MIT1002_03925	0.68	+1.2
4,401,839	-		MIT1002_03925	0.69	+3.0
4,401,839	-		MIT1002_03925	0.69	-0.2
4,401,844	-		MIT1002_03925	0.69	-0.4
4,401,844	-		MIT1002_03925	0.69	-0.7
4,401,844	-		MIT1002_03925	0.69	+0.4
4,401,844	-		MIT1002_03925	0.69	+0.2
4,401,908	+		MIT1002_03925	0.76	+0.5
4,401,954	+		MIT1002_03925	0.82	-0.3
4,402,060	-				-1.0
4,402,075	-				-0.6
4,402,154	-				-0.7
4,402,157	+				+0.2
4,402,165	-				+0.1
4,402,167	+				-0.1
4,402,167	+				-0.0
4,402,167	+				-1.2
4,402,167	+				+0.9
4,402,177	+				-0.2
4,402,178	+				+0.8
4,402,185	-				-0.2
4,402,231	-				-1.2
4,402,251	+				-1.9
4,402,259	-				-1.6
4,402,287	+				-0.0
4,402,287	+				-1.0
4,402,295	-				-2.8
4,402,401	-		MIT1002_03926	0.23	-0.1
4,402,420	+		MIT1002_03926	0.28	-0.1
4,402,436	+		MIT1002_03926	0.33	+0.5
4,402,507	-		MIT1002_03926	0.52	-1.6
4,402,522	-		MIT1002_03926	0.56	-0.2
4,402,536	+		MIT1002_03926	0.59	+0.3
4,402,544	-		MIT1002_03926	0.62	-0.1
4,402,544	-		MIT1002_03926	0.62	-0.4
4,402,571	-		MIT1002_03926	0.69	-0.2
4,402,573	-		MIT1002_03926	0.69	+0.0
4,402,648	-		MIT1002_03926	0.90	+0.1
4,402,675	+				-0.1
4,402,675	+				+2.0
4,402,683	-				+0.0
4,402,683	-				+2.3
4,402,790	+		MIT1002_03927	0.17	-1.3
4,402,790	+		MIT1002_03927	0.17	-0.3
4,402,792	+		MIT1002_03927	0.17	+1.2
4,402,799	-		MIT1002_03927	0.18	+1.3
4,402,814	-		MIT1002_03927	0.21	-0.1
4,402,927	+		MIT1002_03927	0.39	+1.4
4,402,928	+		MIT1002_03927	0.39	+0.0
4,402,960	-		MIT1002_03927	0.44	+1.1
4,402,979	+		MIT1002_03927	0.47	+0.3
4,403,008	+		MIT1002_03927	0.52	+0.1
4,403,035	-		MIT1002_03927	0.56	-0.1
4,403,049	+		MIT1002_03927	0.59	-0.3
4,403,057	-		MIT1002_03927	0.60	+0.6
4,403,057	-		MIT1002_03927	0.60	+0.4
4,403,073	-		MIT1002_03927	0.63	-0.6