Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03916 and MIT1002_03917 are separated by 225 nucleotides MIT1002_03917 and MIT1002_03918 are separated by 164 nucleotides MIT1002_03918 and MIT1002_03919 are separated by 35 nucleotides
MIT1002_03916: MIT1002_03916 - Nickel uptake substrate-specific transmembrane region, at 4,390,303 to 4,391,097
_03916
MIT1002_03917: MIT1002_03917 - putative hemoglobin and hemoglobin-haptoglobin-binding protein 2 precursor, at 4,391,323 to 4,393,650
_03917
MIT1002_03918: MIT1002_03918 - hypothetical protein, at 4,393,815 to 4,393,997
_03918
MIT1002_03919: MIT1002_03919 - Ferripyoverdine receptor precursor, at 4,394,033 to 4,397,197
_03919
Position (kb) 4391
4392
4393
4394 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 4390.336 kb on + strand at 4390.357 kb on + strand at 4390.380 kb on + strand at 4390.380 kb on + strand at 4390.388 kb on - strand, within MIT1002_03916 at 4390.416 kb on + strand, within MIT1002_03916 at 4390.426 kb on + strand, within MIT1002_03916 at 4390.523 kb on + strand, within MIT1002_03916 at 4390.529 kb on + strand, within MIT1002_03916 at 4390.529 kb on + strand, within MIT1002_03916 at 4390.537 kb on - strand, within MIT1002_03916 at 4390.574 kb on + strand, within MIT1002_03916 at 4390.574 kb on + strand, within MIT1002_03916 at 4390.576 kb on + strand, within MIT1002_03916 at 4390.582 kb on - strand, within MIT1002_03916 at 4390.672 kb on - strand, within MIT1002_03916 at 4390.679 kb on + strand, within MIT1002_03916 at 4390.720 kb on - strand, within MIT1002_03916 at 4390.739 kb on + strand, within MIT1002_03916 at 4390.747 kb on - strand, within MIT1002_03916 at 4390.747 kb on - strand, within MIT1002_03916 at 4390.823 kb on + strand, within MIT1002_03916 at 4390.842 kb on + strand, within MIT1002_03916 at 4390.842 kb on + strand, within MIT1002_03916 at 4390.905 kb on - strand, within MIT1002_03916 at 4391.020 kb on + strand at 4391.029 kb on + strand at 4391.029 kb on + strand at 4391.029 kb on + strand at 4391.029 kb on + strand at 4391.029 kb on + strand at 4391.029 kb on + strand at 4391.037 kb on - strand at 4391.037 kb on - strand at 4391.037 kb on - strand at 4391.037 kb on - strand at 4391.037 kb on - strand at 4391.037 kb on - strand at 4391.037 kb on - strand at 4391.037 kb on - strand at 4391.037 kb on - strand at 4391.080 kb on - strand at 4391.080 kb on - strand at 4391.360 kb on + strand at 4391.378 kb on - strand at 4391.415 kb on + strand at 4391.423 kb on - strand at 4391.453 kb on - strand at 4391.455 kb on + strand at 4391.514 kb on + strand at 4391.514 kb on + strand at 4391.714 kb on - strand, within MIT1002_03917 at 4391.714 kb on - strand, within MIT1002_03917 at 4391.731 kb on + strand, within MIT1002_03917 at 4391.741 kb on + strand, within MIT1002_03917 at 4391.762 kb on + strand, within MIT1002_03917 at 4391.829 kb on - strand, within MIT1002_03917 at 4391.884 kb on - strand, within MIT1002_03917 at 4391.901 kb on - strand, within MIT1002_03917 at 4391.954 kb on + strand, within MIT1002_03917 at 4391.962 kb on + strand, within MIT1002_03917 at 4391.969 kb on + strand, within MIT1002_03917 at 4392.013 kb on - strand, within MIT1002_03917 at 4392.072 kb on + strand, within MIT1002_03917 at 4392.127 kb on - strand, within MIT1002_03917 at 4392.167 kb on - strand, within MIT1002_03917 at 4392.247 kb on - strand, within MIT1002_03917 at 4392.250 kb on + strand, within MIT1002_03917 at 4392.260 kb on + strand, within MIT1002_03917 at 4392.268 kb on - strand, within MIT1002_03917 at 4392.268 kb on - strand, within MIT1002_03917 at 4392.295 kb on + strand, within MIT1002_03917 at 4392.515 kb on + strand, within MIT1002_03917 at 4392.533 kb on + strand, within MIT1002_03917 at 4392.584 kb on + strand, within MIT1002_03917 at 4392.584 kb on + strand, within MIT1002_03917 at 4392.584 kb on + strand, within MIT1002_03917 at 4392.592 kb on - strand, within MIT1002_03917 at 4392.592 kb on - strand, within MIT1002_03917 at 4392.592 kb on - strand, within MIT1002_03917 at 4392.594 kb on - strand, within MIT1002_03917 at 4392.614 kb on + strand, within MIT1002_03917 at 4392.652 kb on + strand, within MIT1002_03917 at 4392.652 kb on + strand, within MIT1002_03917 at 4392.655 kb on + strand, within MIT1002_03917 at 4392.660 kb on - strand, within MIT1002_03917 at 4392.660 kb on - strand, within MIT1002_03917 at 4392.673 kb on - strand, within MIT1002_03917 at 4392.690 kb on - strand, within MIT1002_03917 at 4392.778 kb on + strand, within MIT1002_03917 at 4392.783 kb on + strand, within MIT1002_03917 at 4392.783 kb on + strand, within MIT1002_03917 at 4392.786 kb on - strand, within MIT1002_03917 at 4392.786 kb on - strand, within MIT1002_03917 at 4392.931 kb on - strand, within MIT1002_03917 at 4392.931 kb on - strand, within MIT1002_03917 at 4392.933 kb on + strand, within MIT1002_03917 at 4392.978 kb on + strand, within MIT1002_03917 at 4392.986 kb on - strand, within MIT1002_03917 at 4392.993 kb on + strand, within MIT1002_03917 at 4392.996 kb on - strand, within MIT1002_03917 at 4393.001 kb on - strand, within MIT1002_03917 at 4393.022 kb on - strand, within MIT1002_03917 at 4393.142 kb on + strand, within MIT1002_03917 at 4393.150 kb on - strand, within MIT1002_03917 at 4393.150 kb on - strand, within MIT1002_03917 at 4393.204 kb on + strand, within MIT1002_03917 at 4393.204 kb on + strand, within MIT1002_03917 at 4393.216 kb on + strand, within MIT1002_03917 at 4393.234 kb on + strand, within MIT1002_03917 at 4393.294 kb on - strand, within MIT1002_03917 at 4393.294 kb on - strand, within MIT1002_03917 at 4393.375 kb on - strand, within MIT1002_03917 at 4393.387 kb on + strand, within MIT1002_03917 at 4393.395 kb on - strand, within MIT1002_03917 at 4393.413 kb on - strand, within MIT1002_03917 at 4393.421 kb on - strand at 4393.444 kb on - strand at 4393.479 kb on + strand at 4393.509 kb on - strand at 4393.513 kb on + strand at 4393.515 kb on - strand at 4393.521 kb on - strand at 4393.526 kb on + strand at 4393.531 kb on + strand at 4393.531 kb on + strand at 4393.539 kb on - strand at 4393.539 kb on - strand at 4393.588 kb on - strand at 4393.601 kb on + strand at 4393.601 kb on + strand at 4393.601 kb on + strand at 4393.601 kb on + strand at 4393.601 kb on + strand at 4393.609 kb on - strand at 4393.609 kb on - strand at 4393.609 kb on - strand at 4393.609 kb on - strand at 4393.609 kb on - strand at 4393.609 kb on - strand at 4393.609 kb on - strand at 4393.609 kb on - strand at 4393.609 kb on - strand at 4393.609 kb on - strand at 4393.627 kb on - strand at 4393.644 kb on + strand at 4393.644 kb on + strand at 4393.644 kb on + strand at 4393.644 kb on + strand at 4393.644 kb on + strand at 4393.652 kb on - strand at 4393.652 kb on - strand at 4393.652 kb on - strand at 4393.652 kb on - strand at 4393.652 kb on - strand at 4393.652 kb on - strand at 4393.667 kb on + strand at 4393.674 kb on - strand at 4393.697 kb on + strand at 4393.862 kb on + strand, within MIT1002_03918 at 4393.870 kb on - strand, within MIT1002_03918 at 4393.870 kb on - strand, within MIT1002_03918 at 4393.910 kb on + strand, within MIT1002_03918 at 4393.986 kb on - strand at 4394.006 kb on + strand at 4394.120 kb on - strand at 4394.189 kb on + strand at 4394.197 kb on - strand at 4394.221 kb on + strand at 4394.253 kb on - strand at 4394.345 kb on - strand at 4394.361 kb on + strand, within MIT1002_03919 at 4394.361 kb on + strand, within MIT1002_03919 at 4394.381 kb on + strand, within MIT1002_03919 at 4394.381 kb on + strand, within MIT1002_03919 at 4394.389 kb on - strand, within MIT1002_03919 at 4394.389 kb on - strand, within MIT1002_03919 at 4394.420 kb on - strand, within MIT1002_03919 at 4394.425 kb on - strand, within MIT1002_03919 at 4394.453 kb on + strand, within MIT1002_03919 at 4394.458 kb on - strand, within MIT1002_03919 at 4394.464 kb on + strand, within MIT1002_03919 at 4394.472 kb on + strand, within MIT1002_03919 at 4394.549 kb on + strand, within MIT1002_03919 at 4394.565 kb on + strand, within MIT1002_03919 at 4394.573 kb on - strand, within MIT1002_03919 at 4394.584 kb on + strand, within MIT1002_03919
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 4,390,336 + +0.3 4,390,357 + -0.1 4,390,380 + -0.6 4,390,380 + +0.0 4,390,388 - MIT1002_03916 0.11 -0.3 4,390,416 + MIT1002_03916 0.14 -3.8 4,390,426 + MIT1002_03916 0.15 +0.4 4,390,523 + MIT1002_03916 0.28 -0.3 4,390,529 + MIT1002_03916 0.28 +0.5 4,390,529 + MIT1002_03916 0.28 -1.3 4,390,537 - MIT1002_03916 0.29 +1.4 4,390,574 + MIT1002_03916 0.34 +0.6 4,390,574 + MIT1002_03916 0.34 +0.0 4,390,576 + MIT1002_03916 0.34 +0.2 4,390,582 - MIT1002_03916 0.35 +1.5 4,390,672 - MIT1002_03916 0.46 -0.8 4,390,679 + MIT1002_03916 0.47 -1.0 4,390,720 - MIT1002_03916 0.52 -1.2 4,390,739 + MIT1002_03916 0.55 +0.0 4,390,747 - MIT1002_03916 0.56 +1.4 4,390,747 - MIT1002_03916 0.56 -0.0 4,390,823 + MIT1002_03916 0.65 +0.0 4,390,842 + MIT1002_03916 0.68 -0.4 4,390,842 + MIT1002_03916 0.68 -1.8 4,390,905 - MIT1002_03916 0.76 -2.4 4,391,020 + -1.9 4,391,029 + -0.8 4,391,029 + +0.2 4,391,029 + -1.4 4,391,029 + +0.1 4,391,029 + +1.9 4,391,029 + +0.2 4,391,037 - +0.2 4,391,037 - +1.2 4,391,037 - +1.4 4,391,037 - -0.3 4,391,037 - +0.2 4,391,037 - -0.3 4,391,037 - -0.4 4,391,037 - -1.2 4,391,037 - -0.4 4,391,080 - +0.9 4,391,080 - -0.2 4,391,360 + -1.9 4,391,378 - +1.1 4,391,415 + -0.3 4,391,423 - +0.2 4,391,453 - -0.0 4,391,455 + +1.9 4,391,514 + -0.1 4,391,514 + +1.4 4,391,714 - MIT1002_03917 0.17 -2.1 4,391,714 - MIT1002_03917 0.17 +0.4 4,391,731 + MIT1002_03917 0.18 -0.1 4,391,741 + MIT1002_03917 0.18 +0.4 4,391,762 + MIT1002_03917 0.19 -0.7 4,391,829 - MIT1002_03917 0.22 +1.8 4,391,884 - MIT1002_03917 0.24 -0.3 4,391,901 - MIT1002_03917 0.25 +1.3 4,391,954 + MIT1002_03917 0.27 +0.0 4,391,962 + MIT1002_03917 0.27 -0.8 4,391,969 + MIT1002_03917 0.28 +2.0 4,392,013 - MIT1002_03917 0.30 +2.0 4,392,072 + MIT1002_03917 0.32 -2.7 4,392,127 - MIT1002_03917 0.35 +1.0 4,392,167 - MIT1002_03917 0.36 +0.3 4,392,247 - MIT1002_03917 0.40 +0.1 4,392,250 + MIT1002_03917 0.40 +0.5 4,392,260 + MIT1002_03917 0.40 +0.4 4,392,268 - MIT1002_03917 0.41 +2.1 4,392,268 - MIT1002_03917 0.41 +0.3 4,392,295 + MIT1002_03917 0.42 +1.0 4,392,515 + MIT1002_03917 0.51 -3.4 4,392,533 + MIT1002_03917 0.52 -0.4 4,392,584 + MIT1002_03917 0.54 -0.3 4,392,584 + MIT1002_03917 0.54 +2.6 4,392,584 + MIT1002_03917 0.54 -0.2 4,392,592 - MIT1002_03917 0.55 +1.5 4,392,592 - MIT1002_03917 0.55 +0.3 4,392,592 - MIT1002_03917 0.55 -1.4 4,392,594 - MIT1002_03917 0.55 +0.5 4,392,614 + MIT1002_03917 0.55 -0.9 4,392,652 + MIT1002_03917 0.57 +1.3 4,392,652 + MIT1002_03917 0.57 +1.0 4,392,655 + MIT1002_03917 0.57 -1.6 4,392,660 - MIT1002_03917 0.57 +0.5 4,392,660 - MIT1002_03917 0.57 +0.5 4,392,673 - MIT1002_03917 0.58 +0.7 4,392,690 - MIT1002_03917 0.59 -1.1 4,392,778 + MIT1002_03917 0.62 +2.2 4,392,783 + MIT1002_03917 0.63 +0.2 4,392,783 + MIT1002_03917 0.63 +0.9 4,392,786 - MIT1002_03917 0.63 +0.7 4,392,786 - MIT1002_03917 0.63 +0.9 4,392,931 - MIT1002_03917 0.69 -2.0 4,392,931 - MIT1002_03917 0.69 -0.6 4,392,933 + MIT1002_03917 0.69 -3.1 4,392,978 + MIT1002_03917 0.71 -0.1 4,392,986 - MIT1002_03917 0.71 -0.5 4,392,993 + MIT1002_03917 0.72 +0.4 4,392,996 - MIT1002_03917 0.72 +2.9 4,393,001 - MIT1002_03917 0.72 +0.7 4,393,022 - MIT1002_03917 0.73 +0.2 4,393,142 + MIT1002_03917 0.78 -0.7 4,393,150 - MIT1002_03917 0.78 -1.6 4,393,150 - MIT1002_03917 0.78 -1.8 4,393,204 + MIT1002_03917 0.81 -0.6 4,393,204 + MIT1002_03917 0.81 -0.2 4,393,216 + MIT1002_03917 0.81 -2.4 4,393,234 + MIT1002_03917 0.82 +1.6 4,393,294 - MIT1002_03917 0.85 -0.1 4,393,294 - MIT1002_03917 0.85 +0.6 4,393,375 - MIT1002_03917 0.88 +0.6 4,393,387 + MIT1002_03917 0.89 -0.4 4,393,395 - MIT1002_03917 0.89 -1.7 4,393,413 - MIT1002_03917 0.90 -1.0 4,393,421 - +0.6 4,393,444 - +0.3 4,393,479 + -0.3 4,393,509 - +0.3 4,393,513 + +0.9 4,393,515 - +1.8 4,393,521 - -1.0 4,393,526 + +0.4 4,393,531 + -0.6 4,393,531 + -0.2 4,393,539 - +0.5 4,393,539 - -0.9 4,393,588 - -1.3 4,393,601 + +1.1 4,393,601 + -1.0 4,393,601 + -1.0 4,393,601 + -2.2 4,393,601 + -1.5 4,393,609 - -0.9 4,393,609 - +0.3 4,393,609 - +0.3 4,393,609 - +0.0 4,393,609 - +0.2 4,393,609 - -0.6 4,393,609 - -0.5 4,393,609 - -1.3 4,393,609 - -1.8 4,393,609 - -0.8 4,393,627 - -0.3 4,393,644 + -1.3 4,393,644 + -0.7 4,393,644 + -0.6 4,393,644 + -2.0 4,393,644 + +0.7 4,393,652 - +0.5 4,393,652 - +1.0 4,393,652 - +0.9 4,393,652 - -0.3 4,393,652 - -0.5 4,393,652 - -1.0 4,393,667 + -0.6 4,393,674 - +3.0 4,393,697 + -1.7 4,393,862 + MIT1002_03918 0.26 -0.5 4,393,870 - MIT1002_03918 0.30 -0.6 4,393,870 - MIT1002_03918 0.30 -0.2 4,393,910 + MIT1002_03918 0.52 +0.4 4,393,986 - -0.6 4,394,006 + +0.0 4,394,120 - -0.1 4,394,189 + -0.5 4,394,197 - -1.0 4,394,221 + +0.2 4,394,253 - +0.2 4,394,345 - -2.4 4,394,361 + MIT1002_03919 0.10 +1.8 4,394,361 + MIT1002_03919 0.10 -0.1 4,394,381 + MIT1002_03919 0.11 -0.2 4,394,381 + MIT1002_03919 0.11 +1.3 4,394,389 - MIT1002_03919 0.11 -1.6 4,394,389 - MIT1002_03919 0.11 +0.1 4,394,420 - MIT1002_03919 0.12 -0.7 4,394,425 - MIT1002_03919 0.12 +0.1 4,394,453 + MIT1002_03919 0.13 +0.4 4,394,458 - MIT1002_03919 0.13 -0.3 4,394,464 + MIT1002_03919 0.14 -0.7 4,394,472 + MIT1002_03919 0.14 +0.3 4,394,549 + MIT1002_03919 0.16 +0.2 4,394,565 + MIT1002_03919 0.17 +0.3 4,394,573 - MIT1002_03919 0.17 -0.2 4,394,584 + MIT1002_03919 0.17 +0.6
Or see this region's nucleotide sequence