Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03896 and MIT1002_03897 are separated by 2 nucleotides MIT1002_03897 and MIT1002_03898 are separated by 197 nucleotides
MIT1002_03896: MIT1002_03896 - Glutamine--fructose-6-phosphate aminotransferase [isomerizing], at 4,364,138 to 4,365,970
_03896
MIT1002_03897: MIT1002_03897 - Glucitol operon repressor, at 4,365,973 to 4,366,785
_03897
MIT1002_03898: MIT1002_03898 - putative oxidoreductase YdgJ, at 4,366,983 to 4,368,023
_03898
Position (kb) 4365
4366
4367 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4366.002 kb on - strand at 4366.007 kb on - strand at 4366.012 kb on - strand at 4366.103 kb on - strand, within MIT1002_03897 at 4366.196 kb on - strand, within MIT1002_03897 at 4366.293 kb on - strand, within MIT1002_03897 at 4366.390 kb on - strand, within MIT1002_03897 at 4366.390 kb on - strand, within MIT1002_03897 at 4366.390 kb on - strand, within MIT1002_03897 at 4366.390 kb on - strand, within MIT1002_03897 at 4366.508 kb on - strand, within MIT1002_03897 at 4366.605 kb on - strand, within MIT1002_03897 at 4366.764 kb on - strand at 4366.863 kb on - strand at 4367.049 kb on + strand at 4367.096 kb on - strand, within MIT1002_03898 at 4367.097 kb on + strand, within MIT1002_03898 at 4367.105 kb on - strand, within MIT1002_03898 at 4367.135 kb on + strand, within MIT1002_03898 at 4367.226 kb on + strand, within MIT1002_03898 at 4367.226 kb on + strand, within MIT1002_03898 at 4367.241 kb on + strand, within MIT1002_03898 at 4367.241 kb on + strand, within MIT1002_03898 at 4367.249 kb on - strand, within MIT1002_03898 at 4367.249 kb on - strand, within MIT1002_03898 at 4367.278 kb on + strand, within MIT1002_03898 at 4367.281 kb on - strand, within MIT1002_03898 at 4367.387 kb on + strand, within MIT1002_03898 at 4367.414 kb on + strand, within MIT1002_03898 at 4367.430 kb on + strand, within MIT1002_03898 at 4367.431 kb on + strand, within MIT1002_03898 at 4367.432 kb on + strand, within MIT1002_03898 at 4367.553 kb on + strand, within MIT1002_03898 at 4367.561 kb on - strand, within MIT1002_03898 at 4367.674 kb on + strand, within MIT1002_03898 at 4367.682 kb on - strand, within MIT1002_03898 at 4367.707 kb on - strand, within MIT1002_03898 at 4367.718 kb on - strand, within MIT1002_03898 at 4367.720 kb on + strand, within MIT1002_03898
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 4,366,002 - -0.2 4,366,007 - +1.0 4,366,012 - -0.3 4,366,103 - MIT1002_03897 0.16 -1.5 4,366,196 - MIT1002_03897 0.27 -0.7 4,366,293 - MIT1002_03897 0.39 +0.4 4,366,390 - MIT1002_03897 0.51 +0.6 4,366,390 - MIT1002_03897 0.51 +1.3 4,366,390 - MIT1002_03897 0.51 -1.0 4,366,390 - MIT1002_03897 0.51 +0.8 4,366,508 - MIT1002_03897 0.66 -1.2 4,366,605 - MIT1002_03897 0.78 +1.6 4,366,764 - -2.8 4,366,863 - -0.2 4,367,049 + -1.7 4,367,096 - MIT1002_03898 0.11 +1.1 4,367,097 + MIT1002_03898 0.11 +0.5 4,367,105 - MIT1002_03898 0.12 -0.2 4,367,135 + MIT1002_03898 0.15 -1.0 4,367,226 + MIT1002_03898 0.23 -1.6 4,367,226 + MIT1002_03898 0.23 -2.6 4,367,241 + MIT1002_03898 0.25 -0.2 4,367,241 + MIT1002_03898 0.25 +1.3 4,367,249 - MIT1002_03898 0.26 +1.4 4,367,249 - MIT1002_03898 0.26 -0.6 4,367,278 + MIT1002_03898 0.28 +0.1 4,367,281 - MIT1002_03898 0.29 +0.7 4,367,387 + MIT1002_03898 0.39 -0.3 4,367,414 + MIT1002_03898 0.41 -0.6 4,367,430 + MIT1002_03898 0.43 +0.9 4,367,431 + MIT1002_03898 0.43 +0.6 4,367,432 + MIT1002_03898 0.43 -0.4 4,367,553 + MIT1002_03898 0.55 -2.1 4,367,561 - MIT1002_03898 0.56 -0.8 4,367,674 + MIT1002_03898 0.66 +2.3 4,367,682 - MIT1002_03898 0.67 +2.0 4,367,707 - MIT1002_03898 0.70 -0.3 4,367,718 - MIT1002_03898 0.71 +0.3 4,367,720 + MIT1002_03898 0.71 +1.2
Or see this region's nucleotide sequence