Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_03630 and MIT1002_03631 overlap by 1 nucleotides MIT1002_03631 and MIT1002_03632 are separated by 172 nucleotides MIT1002_03632 and MIT1002_03633 are separated by 6 nucleotides
MIT1002_03630: MIT1002_03630 - SCP-2 sterol transfer family protein, at 4,056,110 to 4,056,745
_03630
MIT1002_03631: MIT1002_03631 - Ubiquinone/menaquinone biosynthesis methyltransferase ubiE, at 4,056,745 to 4,057,542
_03631
MIT1002_03632: MIT1002_03632 - DNA-3-methyladenine glycosylase I, at 4,057,715 to 4,058,416
_03632
MIT1002_03633: MIT1002_03633 - Oligopeptidase A, at 4,058,423 to 4,060,459
_03633
Position (kb) 4057
4058
4059 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 4057.591 kb on - strand at 4057.591 kb on - strand at 4057.591 kb on - strand at 4057.609 kb on + strand at 4057.622 kb on + strand at 4057.640 kb on - strand at 4057.644 kb on + strand at 4057.644 kb on + strand at 4057.684 kb on - strand at 4057.698 kb on + strand at 4057.698 kb on + strand at 4057.706 kb on - strand at 4057.720 kb on - strand at 4057.730 kb on - strand at 4057.730 kb on - strand at 4057.766 kb on - strand at 4057.841 kb on + strand, within MIT1002_03632 at 4057.947 kb on - strand, within MIT1002_03632 at 4057.991 kb on - strand, within MIT1002_03632 at 4058.019 kb on + strand, within MIT1002_03632 at 4058.027 kb on - strand, within MIT1002_03632 at 4058.105 kb on + strand, within MIT1002_03632 at 4058.352 kb on - strand at 4058.352 kb on - strand at 4058.352 kb on - strand at 4058.383 kb on - strand at 4058.408 kb on - strand at 4058.484 kb on - strand at 4058.506 kb on + strand at 4058.638 kb on - strand, within MIT1002_03633 at 4058.695 kb on + strand, within MIT1002_03633 at 4058.736 kb on + strand, within MIT1002_03633 at 4058.744 kb on - strand, within MIT1002_03633 at 4058.749 kb on - strand, within MIT1002_03633 at 4058.975 kb on + strand, within MIT1002_03633 at 4058.987 kb on + strand, within MIT1002_03633 at 4059.065 kb on + strand, within MIT1002_03633 at 4059.093 kb on + strand, within MIT1002_03633 at 4059.101 kb on - strand, within MIT1002_03633 at 4059.101 kb on - strand, within MIT1002_03633 at 4059.101 kb on - strand, within MIT1002_03633 at 4059.101 kb on - strand, within MIT1002_03633 at 4059.224 kb on + strand, within MIT1002_03633 at 4059.259 kb on - strand, within MIT1002_03633 at 4059.299 kb on - strand, within MIT1002_03633 at 4059.346 kb on - strand, within MIT1002_03633 at 4059.355 kb on - strand, within MIT1002_03633 at 4059.382 kb on - strand, within MIT1002_03633
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 4,057,591 - -2.6 4,057,591 - +0.1 4,057,591 - +3.0 4,057,609 + +0.9 4,057,622 + -0.4 4,057,640 - +0.1 4,057,644 + +0.5 4,057,644 + +1.4 4,057,684 - +0.0 4,057,698 + -1.4 4,057,698 + -0.3 4,057,706 - +0.5 4,057,720 - +1.3 4,057,730 - -0.1 4,057,730 - +0.3 4,057,766 - -0.8 4,057,841 + MIT1002_03632 0.18 -1.2 4,057,947 - MIT1002_03632 0.33 -0.5 4,057,991 - MIT1002_03632 0.39 +0.2 4,058,019 + MIT1002_03632 0.43 +0.4 4,058,027 - MIT1002_03632 0.44 -1.5 4,058,105 + MIT1002_03632 0.56 -1.7 4,058,352 - -1.0 4,058,352 - +0.5 4,058,352 - -2.2 4,058,383 - +0.9 4,058,408 - -0.9 4,058,484 - -1.5 4,058,506 + +1.5 4,058,638 - MIT1002_03633 0.11 -0.7 4,058,695 + MIT1002_03633 0.13 -1.4 4,058,736 + MIT1002_03633 0.15 +0.0 4,058,744 - MIT1002_03633 0.16 +0.8 4,058,749 - MIT1002_03633 0.16 -0.0 4,058,975 + MIT1002_03633 0.27 -0.9 4,058,987 + MIT1002_03633 0.28 +0.8 4,059,065 + MIT1002_03633 0.32 -0.5 4,059,093 + MIT1002_03633 0.33 +0.7 4,059,101 - MIT1002_03633 0.33 -0.7 4,059,101 - MIT1002_03633 0.33 +0.2 4,059,101 - MIT1002_03633 0.33 -1.7 4,059,101 - MIT1002_03633 0.33 -1.4 4,059,224 + MIT1002_03633 0.39 +1.3 4,059,259 - MIT1002_03633 0.41 -1.0 4,059,299 - MIT1002_03633 0.43 -0.9 4,059,346 - MIT1002_03633 0.45 +1.7 4,059,355 - MIT1002_03633 0.46 +2.5 4,059,382 - MIT1002_03633 0.47 -0.3
Or see this region's nucleotide sequence