Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03308

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
3,690,173	-		MIT1002_03307	0.29	-0.4
3,690,177	+		MIT1002_03307	0.29	+1.6
3,690,185	-		MIT1002_03307	0.30	-1.4
3,690,185	-		MIT1002_03307	0.30	+0.6
3,690,244	+		MIT1002_03307	0.35	+1.2
3,690,248	-		MIT1002_03307	0.36	-0.5
3,690,252	-		MIT1002_03307	0.36	+0.9
3,690,269	+		MIT1002_03307	0.38	-1.4
3,690,326	+		MIT1002_03307	0.43	+1.7
3,690,438	-		MIT1002_03307	0.53	+0.9
3,690,456	+		MIT1002_03307	0.55	+0.6
3,690,456	+		MIT1002_03307	0.55	-0.6
3,690,485	-		MIT1002_03307	0.57	-0.2
3,690,489	-		MIT1002_03307	0.58	-0.5
3,690,503	+		MIT1002_03307	0.59	-1.5
3,690,592	+		MIT1002_03307	0.67	+0.8
3,690,592	+		MIT1002_03307	0.67	-0.2
3,690,592	+		MIT1002_03307	0.67	+1.1
3,690,600	-		MIT1002_03307	0.68	+0.8
3,690,614	+		MIT1002_03307	0.69	-0.2
3,690,648	-		MIT1002_03307	0.72	-1.5
3,690,660	-		MIT1002_03307	0.73	-0.1
3,690,674	-		MIT1002_03307	0.74	+0.3
3,690,776	+		MIT1002_03307	0.83	+0.5
3,690,776	+		MIT1002_03307	0.83	+1.9
3,690,781	+		MIT1002_03307	0.84	+0.1
3,690,781	+		MIT1002_03307	0.84	-0.9
3,690,781	+		MIT1002_03307	0.84	-0.9
3,690,781	+		MIT1002_03307	0.84	+0.0
3,690,781	+		MIT1002_03307	0.84	+0.8
3,690,781	+		MIT1002_03307	0.84	+0.5
3,690,781	+		MIT1002_03307	0.84	+0.8
3,690,781	+		MIT1002_03307	0.84	+2.0
3,690,781	+		MIT1002_03307	0.84	+0.3
3,690,781	+		MIT1002_03307	0.84	+0.7
3,690,781	+		MIT1002_03307	0.84	+0.3
3,690,781	+		MIT1002_03307	0.84	-1.0
3,690,781	+		MIT1002_03307	0.84	+0.2
3,690,781	+		MIT1002_03307	0.84	+0.6
3,690,781	+		MIT1002_03307	0.84	+0.7
3,690,781	-		MIT1002_03307	0.84	+0.4
3,690,784	-		MIT1002_03307	0.84	+0.2
3,690,784	-		MIT1002_03307	0.84	-0.3
3,690,784	-		MIT1002_03307	0.84	-1.6
3,690,789	-		MIT1002_03307	0.85	-0.6
3,690,789	-		MIT1002_03307	0.85	+0.5
3,690,789	-		MIT1002_03307	0.85	-1.5
3,690,789	-		MIT1002_03307	0.85	+0.7
3,690,789	-		MIT1002_03307	0.85	-0.5
3,690,789	-		MIT1002_03307	0.85	-0.4
3,690,789	-		MIT1002_03307	0.85	-0.6
3,690,789	-		MIT1002_03307	0.85	-1.7
3,690,789	-		MIT1002_03307	0.85	-0.6
3,690,791	-		MIT1002_03307	0.85	-0.1
3,690,791	-		MIT1002_03307	0.85	-0.0
3,690,808	-		MIT1002_03307	0.86	-0.1
3,690,810	+		MIT1002_03307	0.87	+1.0
3,690,848	-				-0.8
3,690,922	+				+0.7
3,690,930	-				-0.4
3,690,930	-				-3.2
3,691,216	+				-0.0
3,691,239	-				-0.2
3,691,274	-				-0.4
3,691,275	-				-0.6
3,691,317	+				-0.1
3,691,323	+				-1.4
3,691,370	+				+1.3
3,691,370	+				-1.5
3,691,411	+				-0.8
3,691,411	+				-0.7
3,691,419	-				+1.1
3,691,470	+		MIT1002_03308	0.11	+0.6
3,691,475	+		MIT1002_03308	0.11	-2.2
3,691,475	+		MIT1002_03308	0.11	-1.6
3,691,475	+		MIT1002_03308	0.11	-0.2
3,691,483	-		MIT1002_03308	0.12	+1.2
3,691,483	-		MIT1002_03308	0.12	-0.3
3,691,548	+		MIT1002_03308	0.14	-2.3
3,691,550	-		MIT1002_03308	0.14	-0.2
3,691,552	+		MIT1002_03308	0.14	-0.6
3,691,659	+		MIT1002_03308	0.18	-1.3
3,691,763	+		MIT1002_03308	0.22	+0.4
3,691,763	+		MIT1002_03308	0.22	-0.0
3,691,766	-		MIT1002_03308	0.22	-1.2
3,691,771	-		MIT1002_03308	0.22	-0.1
3,691,773	+		MIT1002_03308	0.22	-0.4
3,691,900	-		MIT1002_03308	0.27	+0.1
3,691,968	+		MIT1002_03308	0.30	-2.2
3,691,973	+		MIT1002_03308	0.30	+1.1
3,691,975	+		MIT1002_03308	0.30	-0.5
3,691,975	+		MIT1002_03308	0.30	+0.6
3,691,992	+		MIT1002_03308	0.30	+0.0
3,692,001	+		MIT1002_03308	0.31	-1.0
3,692,133	+		MIT1002_03308	0.36	+1.6
3,692,141	-		MIT1002_03308	0.36	+0.1
3,692,152	+		MIT1002_03308	0.36	-0.9
3,692,160	-		MIT1002_03308	0.37	-2.6
3,692,174	-		MIT1002_03308	0.37	-0.2
3,692,233	-		MIT1002_03308	0.39	+0.6
3,692,247	-		MIT1002_03308	0.40	-1.0
3,692,253	+		MIT1002_03308	0.40	+0.1
3,692,261	-		MIT1002_03308	0.40	-0.9
3,692,261	-		MIT1002_03308	0.40	+0.1
3,692,319	+		MIT1002_03308	0.43	-1.0
3,692,324	+		MIT1002_03308	0.43	-0.3
3,692,332	-		MIT1002_03308	0.43	+0.6
3,692,332	-		MIT1002_03308	0.43	-0.1
3,692,461	+		MIT1002_03308	0.48	+0.1
3,692,469	-		MIT1002_03308	0.48	+0.8
3,692,553	-		MIT1002_03308	0.51	+2.0
3,692,595	-		MIT1002_03308	0.53	-0.2
3,692,608	-		MIT1002_03308	0.53	-1.0
3,692,617	+		MIT1002_03308	0.54	+0.3
3,692,675	+		MIT1002_03308	0.56	+0.3
3,692,706	-		MIT1002_03308	0.57	+0.9
3,692,806	+		MIT1002_03308	0.61	+0.3
3,692,838	-		MIT1002_03308	0.62	+0.4
3,692,844	-		MIT1002_03308	0.62	+0.0
3,692,854	-		MIT1002_03308	0.62	+0.3
3,692,884	-		MIT1002_03308	0.63	-0.2
3,692,905	-		MIT1002_03308	0.64	-0.8
3,693,070	+		MIT1002_03308	0.70	-0.1
3,693,072	+		MIT1002_03308	0.70	-0.2
3,693,072	+		MIT1002_03308	0.70	-1.0
3,693,090	-		MIT1002_03308	0.71	-0.1
3,693,095	+		MIT1002_03308	0.71	-2.0
3,693,134	-		MIT1002_03308	0.73	-0.5
3,693,153	+		MIT1002_03308	0.73	-1.0
3,693,163	+		MIT1002_03308	0.74	-0.3
3,693,163	+		MIT1002_03308	0.74	-1.0
3,693,163	+		MIT1002_03308	0.74	+0.7
3,693,163	+		MIT1002_03308	0.74	+0.3
3,693,240	+		MIT1002_03308	0.77	-0.5
3,693,240	+		MIT1002_03308	0.77	-1.5
3,693,248	-		MIT1002_03308	0.77	+0.1
3,693,248	-		MIT1002_03308	0.77	-0.0
3,693,248	-		MIT1002_03308	0.77	+0.4
3,693,250	+		MIT1002_03308	0.77	-1.2
3,693,342	-		MIT1002_03308	0.80	+0.2
3,693,394	-		MIT1002_03308	0.82	-2.0
3,693,395	-		MIT1002_03308	0.82	+0.5
3,693,521	-		MIT1002_03308	0.87	-1.2
3,693,542	-		MIT1002_03308	0.88	-0.4
3,693,554	-		MIT1002_03308	0.88	-0.9
3,693,710	-				+0.4
3,693,732	+				-0.2
3,693,732	+				-0.3
3,693,732	+				-1.4
3,693,740	-				+2.8
3,693,835	+				-1.3
3,693,871	-				-0.4
3,693,987	-				-0.9
3,694,007	+				-1.4
3,694,030	+				-1.0
3,694,094	+		MIT1002_03309	0.11	-2.8
3,694,095	-		MIT1002_03309	0.11	-2.0
3,694,102	+		MIT1002_03309	0.12	+0.1
3,694,110	-		MIT1002_03309	0.13	+0.7
3,694,110	-		MIT1002_03309	0.13	-0.5
3,694,110	-		MIT1002_03309	0.13	+3.3
3,694,110	-		MIT1002_03309	0.13	-1.1
3,694,153	-		MIT1002_03309	0.19	+0.1
3,694,158	-		MIT1002_03309	0.19	+1.0
3,694,200	+		MIT1002_03309	0.24	+0.6
3,694,200	+		MIT1002_03309	0.24	-1.2
3,694,218	-		MIT1002_03309	0.27	-0.2
3,694,250	+		MIT1002_03309	0.31	+0.4
3,694,299	+		MIT1002_03309	0.37	+0.4
3,694,307	-		MIT1002_03309	0.38	+0.3
3,694,307	-		MIT1002_03309	0.38	+0.1
3,694,319	+		MIT1002_03309	0.40	-1.4
3,694,320	+		MIT1002_03309	0.40	-1.9
3,694,327	+		MIT1002_03309	0.41	+0.2
3,694,373	+		MIT1002_03309	0.46	-0.9
3,694,375	+		MIT1002_03309	0.47	-0.1
3,694,383	-		MIT1002_03309	0.48	-0.8
3,694,404	+		MIT1002_03309	0.50	+0.3
3,694,484	-		MIT1002_03309	0.60	+0.3
3,694,676	+		MIT1002_03309	0.85	-0.9
3,694,676	+		MIT1002_03309	0.85	-0.0
3,694,676	+		MIT1002_03309	0.85	+0.3
3,694,684	-		MIT1002_03309	0.86	-1.0
3,694,684	-		MIT1002_03309	0.86	-0.4
3,694,684	-		MIT1002_03309	0.86	-1.7
3,694,696	+		MIT1002_03309	0.87	-1.9
3,694,702	+		MIT1002_03309	0.88	+0.4
3,694,704	-		MIT1002_03309	0.88	+0.4
3,694,725	+				+0.5
3,694,764	+				+0.5
3,694,777	+				+0.0
3,694,777	+				+0.1
3,694,798	-				-0.2
3,694,800	+				+0.7
3,694,800	+				+0.3
3,694,808	-				+0.4
3,694,808	-				+0.2
3,694,820	-				-2.2
3,694,829	-				-0.0