Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03180

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
3,542,684	-		MIT1002_03179	0.38	-3.0
3,542,702	+		MIT1002_03179	0.40	-4.6
3,542,703	+		MIT1002_03179	0.40	-4.9
3,542,703	+		MIT1002_03179	0.40	-4.3
3,542,781	+		MIT1002_03179	0.47	-4.9
3,542,782	-		MIT1002_03179	0.47	-0.4
3,542,861	+		MIT1002_03179	0.53	-3.9
3,542,869	-		MIT1002_03179	0.54	-1.9
3,542,935	-		MIT1002_03179	0.60	-2.8
3,542,993	+		MIT1002_03179	0.65	-4.1
3,543,097	+		MIT1002_03179	0.73	-3.4
3,543,118	-		MIT1002_03179	0.75	-3.7
3,543,118	-		MIT1002_03179	0.75	-5.0
3,543,118	-		MIT1002_03179	0.75	-4.6
3,543,155	+		MIT1002_03179	0.78	-5.4
3,543,190	+		MIT1002_03179	0.81	-3.3
3,543,190	+		MIT1002_03179	0.81	-1.4
3,543,190	+		MIT1002_03179	0.81	-0.6
3,543,231	+		MIT1002_03179	0.85	-1.6
3,543,241	-		MIT1002_03179	0.86	-4.6
3,543,241	-		MIT1002_03179	0.86	-3.3
3,543,241	-		MIT1002_03179	0.86	-4.9
3,543,260	-		MIT1002_03179	0.87	-4.1
3,543,260	-		MIT1002_03179	0.87	-4.3
3,543,301	-				-3.5
3,543,384	+				-2.9
3,543,408	+				-1.3
3,543,545	-				-4.5
3,543,571	-				-0.0
3,543,628	+				+1.2
3,543,628	-				+0.4
3,543,630	+				-0.9
3,543,630	+				+1.6
3,543,630	+				-1.2
3,543,638	-				-1.8
3,543,638	-				-1.1
3,543,638	-				+0.4
3,543,638	-				+0.6
3,543,638	-				+0.5
3,543,663	+				-1.7
3,543,752	+		MIT1002_03180	0.21	+0.8
3,543,784	+		MIT1002_03180	0.30	-0.1
3,543,950	+		MIT1002_03180	0.74	+0.3
3,543,978	-		MIT1002_03180	0.81	+0.1
3,544,004	+		MIT1002_03180	0.88	+0.9
3,544,032	-				+0.5
3,544,032	-				+1.7
3,544,128	+				-0.0
3,544,220	+				+3.4
3,544,289	+				+0.2
3,544,299	+				+0.0
3,544,339	-				-0.6
3,544,490	-				-1.7
3,544,673	-		MIT1002_03181	0.14	-1.5
3,544,678	+		MIT1002_03181	0.15	+0.6
3,544,739	-		MIT1002_03181	0.18	-2.8
3,544,778	+		MIT1002_03181	0.20	+3.1
3,544,786	-		MIT1002_03181	0.20	-0.8
3,544,890	+		MIT1002_03181	0.26	-1.0
3,544,945	-		MIT1002_03181	0.29	-1.0
3,544,961	+		MIT1002_03181	0.30	+1.8
3,544,979	-		MIT1002_03181	0.31	-0.1
3,545,020	+		MIT1002_03181	0.33	-1.7
3,545,035	-		MIT1002_03181	0.34	-1.2
3,545,045	-		MIT1002_03181	0.35	-1.1