Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02928

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
3,253,088	-				-0.7
3,253,219	-				-0.9
3,253,264	-				+0.8
3,253,333	-				+0.9
3,253,383	+		MIT1002_02927	0.13	+1.9
3,253,383	+		MIT1002_02927	0.13	-1.7
3,253,383	+		MIT1002_02927	0.13	-1.1
3,253,391	-		MIT1002_02927	0.14	-0.4
3,253,391	-		MIT1002_02927	0.14	-2.0
3,253,391	-		MIT1002_02927	0.14	+0.2
3,253,391	-		MIT1002_02927	0.14	-0.0
3,253,434	-		MIT1002_02927	0.22	+1.0
3,253,496	-		MIT1002_02927	0.32	-0.7
3,253,516	-		MIT1002_02927	0.36	-2.1
3,253,546	-		MIT1002_02927	0.41	-0.8
3,253,564	+		MIT1002_02927	0.44	+2.5
3,253,572	-		MIT1002_02927	0.45	+0.1
3,253,596	-		MIT1002_02927	0.49	-0.2
3,253,596	-		MIT1002_02927	0.49	+0.0
3,253,610	+		MIT1002_02927	0.51	+1.1
3,253,693	+		MIT1002_02927	0.65	-0.3
3,253,701	-		MIT1002_02927	0.67	+0.4
3,253,721	+		MIT1002_02927	0.70	-1.9
3,253,722	-		MIT1002_02927	0.70	-0.5
3,253,722	-		MIT1002_02927	0.70	-0.9
3,253,724	-		MIT1002_02927	0.71	-0.5
3,253,729	-		MIT1002_02927	0.72	-0.8
3,253,729	-		MIT1002_02927	0.72	+0.5
3,253,729	-		MIT1002_02927	0.72	-0.1
3,253,729	-		MIT1002_02927	0.72	+0.9
3,253,847	+				+0.7
3,253,857	+				-1.5
3,253,857	+				+0.5
3,253,857	+				+1.4
3,253,900	+				-0.5
3,253,908	-				-0.8
3,253,997	+				-0.5
3,254,008	+				-0.1
3,254,016	-				-0.1
3,254,016	-				-0.1
3,254,085	+				-0.7
3,254,096	-				+0.7
3,254,098	+				+0.9
3,254,106	-				-0.7
3,254,139	-				-0.4
3,254,146	+				-0.9
3,254,182	+				+0.1
3,254,201	+				+1.9
3,254,209	-				+1.1
3,254,215	+				+0.5
3,254,228	-				-0.3
3,254,235	+				+1.1
3,254,267	+				-1.7
3,254,267	+				+2.6
3,254,267	+				-0.7
3,254,277	+				-1.4
3,254,409	+		MIT1002_02928	0.11	+0.2
3,254,450	+		MIT1002_02928	0.12	-0.2
3,254,450	+		MIT1002_02928	0.12	+1.2
3,254,450	+		MIT1002_02928	0.12	-1.2
3,254,554	-		MIT1002_02928	0.15	+0.2
3,254,574	+		MIT1002_02928	0.16	+0.1
3,254,574	+		MIT1002_02928	0.16	+0.2
3,254,582	-		MIT1002_02928	0.16	+0.4
3,254,625	-		MIT1002_02928	0.17	+1.0
3,254,632	+		MIT1002_02928	0.17	-0.7
3,254,637	+		MIT1002_02928	0.17	-1.3
3,254,637	+		MIT1002_02928	0.17	-0.4
3,254,645	-		MIT1002_02928	0.18	+0.8
3,254,645	-		MIT1002_02928	0.18	-0.4
3,254,645	-		MIT1002_02928	0.18	+0.0
3,254,719	+		MIT1002_02928	0.20	-2.2
3,254,877	+		MIT1002_02928	0.24	-0.3
3,254,893	+		MIT1002_02928	0.25	-0.3
3,254,980	+		MIT1002_02928	0.27	+0.7
3,254,987	+		MIT1002_02928	0.27	-2.3
3,254,988	-		MIT1002_02928	0.27	+0.2
3,254,988	-		MIT1002_02928	0.27	+0.8
3,255,007	-		MIT1002_02928	0.28	+0.2
3,255,081	+		MIT1002_02928	0.30	-1.7
3,255,131	-		MIT1002_02928	0.32	+0.1
3,255,138	+		MIT1002_02928	0.32	+0.5
3,255,138	+		MIT1002_02928	0.32	-1.2
3,255,146	-		MIT1002_02928	0.32	+1.0
3,255,207	+		MIT1002_02928	0.34	+1.9
3,255,215	-		MIT1002_02928	0.34	-1.2
3,255,273	+		MIT1002_02928	0.36	-0.0
3,255,309	-		MIT1002_02928	0.37	+0.1
3,255,412	-		MIT1002_02928	0.40	+1.1
3,255,454	+		MIT1002_02928	0.41	-1.2
3,255,462	-		MIT1002_02928	0.41	+0.3
3,255,465	+		MIT1002_02928	0.41	+0.3
3,255,465	+		MIT1002_02928	0.41	+0.5
3,255,465	+		MIT1002_02928	0.41	-0.1
3,255,465	+		MIT1002_02928	0.41	+0.9
3,255,465	+		MIT1002_02928	0.41	+0.8
3,255,473	-		MIT1002_02928	0.41	-0.9
3,255,473	-		MIT1002_02928	0.41	+1.5
3,255,473	-		MIT1002_02928	0.41	-0.5
3,255,473	-		MIT1002_02928	0.41	-3.3
3,255,488	-		MIT1002_02928	0.42	+0.2
3,255,494	+		MIT1002_02928	0.42	+1.3
3,255,557	+		MIT1002_02928	0.44	+2.3
3,255,565	-		MIT1002_02928	0.44	+0.3
3,255,570	+		MIT1002_02928	0.44	+0.9
3,255,624	-		MIT1002_02928	0.46	-0.4
3,255,626	+		MIT1002_02928	0.46	-0.3
3,255,631	+		MIT1002_02928	0.46	-1.9
3,255,650	-		MIT1002_02928	0.46	-1.4
3,255,673	+		MIT1002_02928	0.47	-0.7
3,255,673	+		MIT1002_02928	0.47	-0.2
3,255,681	-		MIT1002_02928	0.47	+1.4
3,255,681	-		MIT1002_02928	0.47	+0.9
3,255,681	-		MIT1002_02928	0.47	-2.8
3,255,681	-		MIT1002_02928	0.47	-1.3
3,255,730	-		MIT1002_02928	0.49	+1.2
3,255,737	+		MIT1002_02928	0.49	+0.1
3,255,752	-		MIT1002_02928	0.49	-1.4
3,255,778	+		MIT1002_02928	0.50	-0.2
3,255,784	-		MIT1002_02928	0.50	-0.1
3,255,882	+		MIT1002_02928	0.53	+1.1
3,255,921	+		MIT1002_02928	0.54	-0.9
3,255,928	+		MIT1002_02928	0.54	-0.1
3,255,947	-		MIT1002_02928	0.55	-1.1
3,255,957	-		MIT1002_02928	0.55	-0.0
3,255,961	-		MIT1002_02928	0.55	-4.0
3,255,963	+		MIT1002_02928	0.55	+0.7
3,256,005	+		MIT1002_02928	0.57	+1.0
3,256,010	+		MIT1002_02928	0.57	-0.6
3,256,132	+		MIT1002_02928	0.60	+0.3
3,256,134	+		MIT1002_02928	0.60	+0.4
3,256,134	+		MIT1002_02928	0.60	-1.4
3,256,140	-		MIT1002_02928	0.60	+0.8
3,256,140	-		MIT1002_02928	0.60	-2.7
3,256,168	-		MIT1002_02928	0.61	+1.2
3,256,180	+		MIT1002_02928	0.62	-2.0
3,256,247	+		MIT1002_02928	0.64	+1.4
3,256,247	+		MIT1002_02928	0.64	-1.2
3,256,255	-		MIT1002_02928	0.64	+0.5
3,256,255	-		MIT1002_02928	0.64	+0.5
3,256,255	-		MIT1002_02928	0.64	-0.9
3,256,255	-		MIT1002_02928	0.64	+0.2
3,256,255	-		MIT1002_02928	0.64	-1.6
3,256,286	-		MIT1002_02928	0.65	-0.8
3,256,345	+		MIT1002_02928	0.66	+1.8
3,256,359	+		MIT1002_02928	0.67	+0.0
3,256,359	+		MIT1002_02928	0.67	-0.1
3,256,362	+		MIT1002_02928	0.67	-0.5
3,256,446	-		MIT1002_02928	0.69	-1.0
3,256,446	-		MIT1002_02928	0.69	+0.1
3,256,478	+		MIT1002_02928	0.70	-1.2
3,256,486	+		MIT1002_02928	0.70	-0.8
3,256,486	+		MIT1002_02928	0.70	+0.3
3,256,494	-		MIT1002_02928	0.71	-1.1
3,256,494	-		MIT1002_02928	0.71	-2.3
3,256,496	+		MIT1002_02928	0.71	-0.6
3,256,529	+		MIT1002_02928	0.72	-1.4
3,256,529	+		MIT1002_02928	0.72	-0.4
3,256,537	-		MIT1002_02928	0.72	+0.9
3,256,537	-		MIT1002_02928	0.72	+1.1
3,256,544	+		MIT1002_02928	0.72	+0.1
3,256,588	+		MIT1002_02928	0.73	-2.1
3,256,602	+		MIT1002_02928	0.74	+0.5
3,256,607	+		MIT1002_02928	0.74	-1.2
3,256,663	-		MIT1002_02928	0.75	-0.8
3,256,691	-		MIT1002_02928	0.76	-0.6
3,256,712	-		MIT1002_02928	0.77	-0.7
3,256,712	-		MIT1002_02928	0.77	-0.0
3,256,743	+		MIT1002_02928	0.78	-0.7
3,256,785	+		MIT1002_02928	0.79	-0.6
3,256,818	-		MIT1002_02928	0.80	-0.7
3,256,894	+		MIT1002_02928	0.82	+0.5
3,256,956	-		MIT1002_02928	0.84	+1.0
3,256,968	-		MIT1002_02928	0.84	-0.4
3,257,028	-		MIT1002_02928	0.86	-0.8
3,257,080	-		MIT1002_02928	0.87	-0.4
3,257,122	+		MIT1002_02928	0.89	-0.6
3,257,165	-		MIT1002_02928	0.90	-0.1
3,257,167	+		MIT1002_02928	0.90	-0.9
3,257,167	+		MIT1002_02928	0.90	+1.1
3,257,167	-		MIT1002_02928	0.90	-0.9
3,257,172	+				+1.3
3,257,172	+				+0.7
3,257,175	-				+1.2
3,257,175	-				-0.4
3,257,212	+				-0.5
3,257,212	+				-3.0
3,257,212	+				+0.3
3,257,212	+				+1.5
3,257,212	+				+0.5
3,257,220	-				-0.1
3,257,220	-				+0.3
3,257,220	-				-0.9
3,257,220	-				+0.0
3,257,351	-				-0.5
3,257,472	-				+2.2
3,257,569	-				+1.3
3,257,588	+				+0.0
3,258,008	-		MIT1002_02929	0.58	-2.3
3,258,139	-		MIT1002_02929	0.82	-1.2
3,258,161	-		MIT1002_02929	0.86	-0.7
3,258,243	-				+0.9
3,258,278	+				+0.6
3,258,310	-				+0.9
3,258,310	-				-1.6
3,258,421	+				+0.8
3,258,421	+				+0.5
3,258,439	-				-1.0