Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02587

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
2,886,309	+		MIT1002_02585	0.48	-0.9
2,886,357	+		MIT1002_02585	0.53	+0.1
2,886,365	-		MIT1002_02585	0.54	-0.1
2,886,481	-		MIT1002_02585	0.64	+2.0
2,886,577	-		MIT1002_02585	0.73	-3.1
2,886,607	+		MIT1002_02585	0.76	-1.8
2,886,628	+		MIT1002_02585	0.78	+0.7
2,886,711	-		MIT1002_02585	0.86	+0.5
2,886,751	+		MIT1002_02585	0.89	+0.8
2,886,758	-		MIT1002_02585	0.90	-1.3
2,886,759	-				-0.8
2,886,847	+				+2.3
2,886,911	-		MIT1002_02586	0.12	-1.5
2,887,029	+		MIT1002_02586	0.52	-0.4
2,887,056	-		MIT1002_02586	0.61	-1.6
2,887,244	+				+0.7
2,887,252	-				-0.3
2,887,256	+				+0.1
2,887,256	+				-1.7
2,887,259	-				+0.2
2,887,272	-				-0.6
2,887,291	+				+0.9
2,887,299	-				+0.6
2,887,321	+				-1.2
2,887,322	-				-0.7
2,887,398	-				-0.2
2,887,398	-				-1.2
2,887,455	-		MIT1002_02587	0.14	-1.3
2,887,562	+		MIT1002_02587	0.23	-0.2
2,887,603	-		MIT1002_02587	0.27	-1.2
2,887,769	+		MIT1002_02587	0.41	-0.1
2,888,059	-		MIT1002_02587	0.66	-1.0
2,888,195	-		MIT1002_02587	0.78	+0.2
2,888,217	-		MIT1002_02587	0.80	-1.0
2,888,316	+		MIT1002_02587	0.89	-0.2
2,888,324	-		MIT1002_02587	0.89	+0.8
2,888,365	+				+0.1
2,888,371	+				-0.6
2,888,599	+				+1.9
2,888,609	-				+1.0
2,888,655	+				+0.8
2,888,703	-		MIT1002_02588	0.12	+0.3
2,889,004	-		MIT1002_02588	0.30	+1.8
2,889,042	+		MIT1002_02588	0.32	+0.8
2,889,086	+		MIT1002_02588	0.35	+2.6
2,889,118	-		MIT1002_02588	0.37	+1.2
2,889,158	-		MIT1002_02588	0.39	+1.3
2,889,220	+		MIT1002_02588	0.43	+0.4
2,889,322	-		MIT1002_02588	0.49	+0.7
2,889,354	+		MIT1002_02588	0.51	+0.1