Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02398

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
2,674,261	+		MIT1002_02397	0.59	-1.6
2,674,264	-		MIT1002_02397	0.59	-0.5
2,674,271	+		MIT1002_02397	0.60	+1.2
2,674,275	+		MIT1002_02397	0.60	-1.1
2,674,297	+		MIT1002_02397	0.61	-0.1
2,674,299	+		MIT1002_02397	0.62	-0.1
2,674,299	+		MIT1002_02397	0.62	-0.0
2,674,307	-		MIT1002_02397	0.62	-0.8
2,674,307	-		MIT1002_02397	0.62	-0.1
2,674,307	-		MIT1002_02397	0.62	-1.3
2,674,307	-		MIT1002_02397	0.62	-0.6
2,674,318	+		MIT1002_02397	0.63	+0.7
2,674,321	-		MIT1002_02397	0.63	-0.2
2,674,327	-		MIT1002_02397	0.63	+0.1
2,674,327	-		MIT1002_02397	0.63	-0.5
2,674,327	-		MIT1002_02397	0.63	-0.6
2,674,327	-		MIT1002_02397	0.63	-0.4
2,674,337	-		MIT1002_02397	0.64	+0.4
2,674,337	-		MIT1002_02397	0.64	+0.3
2,674,359	-		MIT1002_02397	0.65	-0.1
2,674,392	-		MIT1002_02397	0.68	-0.2
2,674,402	+		MIT1002_02397	0.68	+0.5
2,674,402	+		MIT1002_02397	0.68	-0.2
2,674,410	-		MIT1002_02397	0.69	+0.7
2,674,410	-		MIT1002_02397	0.69	-3.6
2,674,458	+		MIT1002_02397	0.72	+1.5
2,674,466	-		MIT1002_02397	0.72	-0.2
2,674,492	+		MIT1002_02397	0.74	+0.9
2,674,492	+		MIT1002_02397	0.74	-0.0
2,674,492	+		MIT1002_02397	0.74	-0.2
2,674,497	+		MIT1002_02397	0.74	+0.6
2,674,505	-		MIT1002_02397	0.75	-0.1
2,674,514	+		MIT1002_02397	0.75	+0.2
2,674,514	+		MIT1002_02397	0.75	+0.2
2,674,522	-		MIT1002_02397	0.76	-2.5
2,674,656	-		MIT1002_02397	0.85	-1.7
2,674,827	-				+0.8
2,674,829	+				+2.3
2,674,829	+				+0.8
2,674,829	+				+0.2
2,674,829	+				+1.0
2,674,829	+				-1.1
2,674,837	-				-0.8
2,674,837	-				-2.1
2,674,837	-				-0.1
2,674,933	-				+0.0
2,674,990	-				-1.8
2,675,006	-				-0.5
2,675,112	-				-0.9
2,675,112	-				-2.4
2,675,112	-				+1.2
2,675,143	+				-0.2
2,675,196	+				+1.2
2,675,224	-				-0.0
2,675,261	-				-3.5
2,675,330	+				-1.6
2,675,340	+				-0.2
2,675,362	-				-0.6
2,675,362	-				+0.4
2,675,362	-				+0.4
2,675,362	-				-0.7
2,675,367	-				-0.6
2,675,419	+				-1.0
2,675,445	+		MIT1002_02398	0.11	+0.2
2,675,479	+		MIT1002_02398	0.12	-0.6
2,675,487	-		MIT1002_02398	0.13	-0.3
2,675,552	+		MIT1002_02398	0.16	-2.3
2,675,583	+		MIT1002_02398	0.17	-1.2
2,675,583	+		MIT1002_02398	0.17	-0.8
2,675,591	-		MIT1002_02398	0.18	-1.8
2,675,598	+		MIT1002_02398	0.18	-1.4
2,675,603	+		MIT1002_02398	0.18	-1.2
2,675,814	-		MIT1002_02398	0.28	-2.8
2,675,815	+		MIT1002_02398	0.28	-3.2
2,675,878	+		MIT1002_02398	0.31	-0.7
2,675,878	+		MIT1002_02398	0.31	-0.0
2,675,885	-		MIT1002_02398	0.32	-0.7
2,675,955	+		MIT1002_02398	0.35	-1.3
2,676,120	+		MIT1002_02398	0.43	-1.3
2,676,120	+		MIT1002_02398	0.43	-0.7
2,676,128	-		MIT1002_02398	0.43	-0.7
2,676,189	+		MIT1002_02398	0.46	+0.4
2,676,227	+		MIT1002_02398	0.48	-0.5
2,676,227	+		MIT1002_02398	0.48	-1.4
2,676,235	-		MIT1002_02398	0.48	-2.0
2,676,338	-		MIT1002_02398	0.53	-0.2
2,676,384	+		MIT1002_02398	0.56	-0.2
2,676,384	+		MIT1002_02398	0.56	-0.3
2,676,394	+		MIT1002_02398	0.56	-1.4
2,676,458	+		MIT1002_02398	0.59	-1.0
2,676,466	-		MIT1002_02398	0.59	-2.8
2,676,466	-		MIT1002_02398	0.59	+0.1
2,676,480	+		MIT1002_02398	0.60	+0.1
2,676,537	+		MIT1002_02398	0.63	-1.4
2,676,545	-		MIT1002_02398	0.63	-1.5
2,676,605	-		MIT1002_02398	0.66	-0.1
2,676,610	-		MIT1002_02398	0.66	-2.2
2,676,661	+		MIT1002_02398	0.69	-0.0
2,676,689	-		MIT1002_02398	0.70	+0.0
2,676,692	+		MIT1002_02398	0.70	-1.0
2,676,735	-		MIT1002_02398	0.72	-1.8
2,676,856	-		MIT1002_02398	0.78	-1.5
2,677,033	+		MIT1002_02398	0.87	-1.4
2,677,040	-		MIT1002_02398	0.87	+2.8
2,677,067	+		MIT1002_02398	0.88	-0.5
2,677,072	+		MIT1002_02398	0.89	-1.0
2,677,072	+		MIT1002_02398	0.89	-3.6
2,677,072	+		MIT1002_02398	0.89	-0.5
2,677,075	-		MIT1002_02398	0.89	-0.3
2,677,080	-		MIT1002_02398	0.89	-2.4
2,677,080	-		MIT1002_02398	0.89	-0.1
2,677,096	+		MIT1002_02398	0.90	-0.4
2,677,130	+				+0.7
2,677,130	+				-0.8
2,677,261	-				-2.2
2,677,328	-				-1.9
2,677,352	+				-0.8