Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02315

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
2,581,036	+		MIT1002_02314	0.35	+1.2
2,581,083	-		MIT1002_02314	0.38	-0.6
2,581,083	-		MIT1002_02314	0.38	-1.2
2,581,109	+		MIT1002_02314	0.40	-0.3
2,581,124	+		MIT1002_02314	0.41	+0.0
2,581,196	-		MIT1002_02314	0.46	-0.9
2,581,247	-		MIT1002_02314	0.50	+0.6
2,581,249	+		MIT1002_02314	0.50	+1.4
2,581,316	+		MIT1002_02314	0.55	+0.5
2,581,318	-		MIT1002_02314	0.55	-2.3
2,581,372	+		MIT1002_02314	0.59	-0.3
2,581,372	+		MIT1002_02314	0.59	-0.1
2,581,372	+		MIT1002_02314	0.59	+1.8
2,581,380	-		MIT1002_02314	0.59	+0.4
2,581,380	-		MIT1002_02314	0.59	+0.9
2,581,380	-		MIT1002_02314	0.59	-0.1
2,581,380	-		MIT1002_02314	0.59	-0.3
2,581,380	-		MIT1002_02314	0.59	+0.0
2,581,453	-		MIT1002_02314	0.65	+2.5
2,581,464	+		MIT1002_02314	0.65	-0.4
2,581,464	+		MIT1002_02314	0.65	-0.8
2,581,464	+		MIT1002_02314	0.65	+0.8
2,581,464	+		MIT1002_02314	0.65	+1.3
2,581,579	+		MIT1002_02314	0.74	-0.9
2,581,579	+		MIT1002_02314	0.74	+0.2
2,581,587	-		MIT1002_02314	0.74	+0.3
2,581,616	-		MIT1002_02314	0.76	-0.0
2,581,651	+		MIT1002_02314	0.79	+0.8
2,581,661	+		MIT1002_02314	0.79	-3.7
2,581,671	+		MIT1002_02314	0.80	+0.5
2,581,679	-		MIT1002_02314	0.81	-0.1
2,581,679	-		MIT1002_02314	0.81	-0.5
2,581,679	-		MIT1002_02314	0.81	+1.5
2,581,684	+		MIT1002_02314	0.81	-0.9
2,581,702	+		MIT1002_02314	0.82	+0.8
2,581,702	+		MIT1002_02314	0.82	-1.2
2,581,702	+		MIT1002_02314	0.82	-1.7
2,581,702	+		MIT1002_02314	0.82	-0.1
2,581,710	-		MIT1002_02314	0.83	-0.3
2,581,710	-		MIT1002_02314	0.83	+1.9
2,581,710	-		MIT1002_02314	0.83	+0.3
2,581,715	-		MIT1002_02314	0.83	-1.2
2,581,715	-		MIT1002_02314	0.83	+1.6
2,581,730	+		MIT1002_02314	0.84	-1.2
2,581,831	-				+1.1
2,581,877	-				-1.0
2,581,918	+				+1.0
2,581,948	+				-0.1
2,581,948	+				+0.6
2,582,030	+				+1.1
2,582,069	+				+0.8
2,582,108	+				+0.2
2,582,114	+				+0.9
2,582,130	+				+0.0
2,582,136	+		MIT1002_02315	0.11	+2.0
2,582,138	-		MIT1002_02315	0.11	+1.6
2,582,138	-		MIT1002_02315	0.11	-0.0
2,582,141	+		MIT1002_02315	0.11	+0.5
2,582,149	-		MIT1002_02315	0.12	+0.3
2,582,149	-		MIT1002_02315	0.12	+0.9
2,582,194	-		MIT1002_02315	0.17	+1.3
2,582,203	+		MIT1002_02315	0.17	-0.7
2,582,206	-		MIT1002_02315	0.18	+1.3
2,582,211	-		MIT1002_02315	0.18	-1.2
2,582,211	-		MIT1002_02315	0.18	+0.8
2,582,241	+		MIT1002_02315	0.21	-0.2
2,582,249	-		MIT1002_02315	0.22	+0.7
2,582,249	-		MIT1002_02315	0.22	-1.5
2,582,251	+		MIT1002_02315	0.22	-0.2
2,582,259	-		MIT1002_02315	0.23	-0.7
2,582,386	-		MIT1002_02315	0.36	+0.2
2,582,454	+		MIT1002_02315	0.43	+0.7
2,582,517	-		MIT1002_02315	0.50	-0.3
2,582,525	-		MIT1002_02315	0.50	-0.5
2,582,553	+		MIT1002_02315	0.53	+1.2
2,582,553	+		MIT1002_02315	0.53	-0.1
2,582,553	+		MIT1002_02315	0.53	+0.8
2,582,561	-		MIT1002_02315	0.54	+1.6
2,582,561	-		MIT1002_02315	0.54	-0.4
2,582,651	-		MIT1002_02315	0.63	-1.0
2,582,702	-		MIT1002_02315	0.69	-0.1
2,582,755	+		MIT1002_02315	0.74	-2.1
2,582,785	-		MIT1002_02315	0.77	-0.8
2,582,785	-		MIT1002_02315	0.77	+0.1
2,582,985	-				+0.3
2,583,021	+				+1.2
2,583,132	+				+0.3
2,583,172	+				-0.4
2,583,180	-				+0.2
2,583,199	+		MIT1002_02316	0.11	+0.1
2,583,324	-		MIT1002_02316	0.23	+0.2
2,583,346	-		MIT1002_02316	0.25	-2.3
2,583,524	-		MIT1002_02316	0.42	-0.5
2,583,608	+		MIT1002_02316	0.50	+1.3
2,583,611	+		MIT1002_02316	0.50	-0.1
2,583,613	+		MIT1002_02316	0.50	-0.8
2,583,619	-		MIT1002_02316	0.51	+1.0
2,583,673	+		MIT1002_02316	0.56	+2.1
2,583,681	-		MIT1002_02316	0.57	-0.1
2,583,681	-		MIT1002_02316	0.57	+0.7
2,583,701	+		MIT1002_02316	0.58	+0.3
2,583,709	-		MIT1002_02316	0.59	+0.6
2,583,767	+		MIT1002_02316	0.65	-0.7
2,583,767	+		MIT1002_02316	0.65	+0.1
2,583,775	-		MIT1002_02316	0.65	-1.3
2,583,775	-		MIT1002_02316	0.65	+0.9
2,583,809	-		MIT1002_02316	0.69	-2.3
2,583,809	-		MIT1002_02316	0.69	-0.1
2,583,882	+		MIT1002_02316	0.76	-2.6
2,583,949	+		MIT1002_02316	0.82	+1.0
2,583,949	+		MIT1002_02316	0.82	+0.3