Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02246

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
2,505,200	-		MIT1002_02243	0.61	+1.1
2,505,200	-		MIT1002_02243	0.61	+0.8
2,505,229	+		MIT1002_02243	0.74	-0.0
2,505,287	-				+0.8
2,505,287	-				-0.5
2,505,298	+				-0.5
2,505,324	+				-1.2
2,505,332	-				+1.7
2,505,366	+				+1.0
2,505,366	+				-0.6
2,505,374	-				-1.0
2,505,516	-		MIT1002_02244	0.22	+1.5
2,505,562	-		MIT1002_02244	0.43	-1.4
2,505,603	-		MIT1002_02244	0.62	-3.4
2,505,791	+		MIT1002_02245	0.34	+0.3
2,505,822	-		MIT1002_02245	0.45	-0.9
2,505,865	-		MIT1002_02245	0.59	-0.1
2,505,869	+		MIT1002_02245	0.61	-0.3
2,505,877	-		MIT1002_02245	0.63	+0.1
2,506,035	-				-1.1
2,506,037	+				-0.3
2,506,059	-				-1.3
2,506,060	-				-1.2
2,506,074	-				-1.7
2,506,165	+				+2.9
2,506,258	+		MIT1002_02246	0.77	-2.8
2,506,263	-		MIT1002_02246	0.82	-2.5
2,506,277	+				-0.4
2,506,277	+				+0.6
2,506,277	+				+0.2
2,506,277	+				+0.2
2,506,285	-				-1.0
2,506,285	-				+0.4
2,506,285	-				+0.2
2,506,285	-				-0.4
2,506,285	-				+1.3
2,506,285	-				-0.2
2,506,285	-				-0.8
2,506,285	-				+0.4
2,506,287	+				-0.3
2,506,295	-				-0.3
2,506,295	-				+0.2
2,506,368	+		MIT1002_02247	0.43	+0.1
2,506,381	-		MIT1002_02247	0.50	+2.2
2,506,444	-		MIT1002_02247	0.86	+0.9
2,506,462	-				-0.2
2,506,486	+				-0.4
2,506,493	+				+1.0
2,506,504	+				-3.0
2,506,512	-				-0.0
2,506,522	-				-1.0
2,506,537	+				-1.7
2,506,562	-				+2.4
2,506,680	-		MIT1002_02248	0.35	-1.9
2,506,714	+		MIT1002_02248	0.47	+0.8
2,506,724	+		MIT1002_02248	0.51	+1.2
2,506,756	+		MIT1002_02248	0.63	-0.6
2,506,781	-		MIT1002_02248	0.72	+1.0
2,506,861	+				+2.6
2,506,924	+				+0.3
2,506,950	+				+1.1
2,507,123	-		MIT1002_02249	0.33	-0.4
2,507,138	+		MIT1002_02249	0.37	-1.1
2,507,190	-		MIT1002_02249	0.52	-0.4
2,507,266	-		MIT1002_02249	0.74	-0.3