Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_01773 and MIT1002_01775 are separated by 120 nucleotides MIT1002_01775 and MIT1002_01776 are separated by 407 nucleotides MIT1002_01776 and MIT1002_01777 are separated by 142 nucleotides
MIT1002_01773: MIT1002_01773 - tRNA pseudouridine synthase B, at 1,970,529 to 1,971,503
_01773
MIT1002_01775: MIT1002_01775 - 30S ribosomal protein S15, at 1,971,624 to 1,971,893
_01775
MIT1002_01776: MIT1002_01776 - Ribosomal large subunit pseudouridine synthase F, at 1,972,301 to 1,973,059
_01776
MIT1002_01777: MIT1002_01777 - chromosome segregation protein SMC, at 1,973,202 to 1,974,014
_01777
Position (kb) 1972
1973
1974 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1971.351 kb on + strand, within MIT1002_01773 at 1971.358 kb on - strand, within MIT1002_01773 at 1971.360 kb on - strand, within MIT1002_01773 at 1971.401 kb on + strand, within MIT1002_01773 at 1971.438 kb on + strand at 1971.443 kb on + strand at 1971.446 kb on - strand at 1971.525 kb on + strand at 1971.856 kb on + strand, within MIT1002_01775 at 1971.856 kb on + strand, within MIT1002_01775 at 1971.954 kb on + strand at 1971.962 kb on - strand at 1971.964 kb on + strand at 1971.975 kb on + strand at 1972.000 kb on + strand at 1972.194 kb on - strand at 1972.384 kb on + strand, within MIT1002_01776 at 1972.464 kb on - strand, within MIT1002_01776 at 1972.736 kb on - strand, within MIT1002_01776 at 1972.817 kb on + strand, within MIT1002_01776 at 1972.817 kb on - strand, within MIT1002_01776 at 1972.900 kb on + strand, within MIT1002_01776 at 1972.916 kb on - strand, within MIT1002_01776 at 1972.979 kb on + strand, within MIT1002_01776 at 1973.008 kb on + strand at 1973.070 kb on + strand at 1973.178 kb on - strand at 1973.178 kb on - strand at 1973.197 kb on - strand at 1973.331 kb on - strand, within MIT1002_01777 at 1973.339 kb on - strand, within MIT1002_01777 at 1973.420 kb on + strand, within MIT1002_01777 at 1973.520 kb on - strand, within MIT1002_01777 at 1973.543 kb on - strand, within MIT1002_01777 at 1973.681 kb on - strand, within MIT1002_01777 at 1973.790 kb on - strand, within MIT1002_01777 at 1973.790 kb on - strand, within MIT1002_01777 at 1973.852 kb on - strand, within MIT1002_01777 at 1973.865 kb on + strand, within MIT1002_01777 at 1973.873 kb on - strand, within MIT1002_01777 at 1973.902 kb on + strand, within MIT1002_01777 at 1973.970 kb on - strand at 1974.035 kb on + strand at 1974.040 kb on + strand at 1974.040 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 1,971,351 + MIT1002_01773 0.84 -2.3 1,971,358 - MIT1002_01773 0.85 -1.5 1,971,360 - MIT1002_01773 0.85 +0.5 1,971,401 + MIT1002_01773 0.89 -0.0 1,971,438 + -1.0 1,971,443 + -2.3 1,971,446 - +0.4 1,971,525 + -2.6 1,971,856 + MIT1002_01775 0.86 -2.2 1,971,856 + MIT1002_01775 0.86 -0.8 1,971,954 + +0.4 1,971,962 - +0.4 1,971,964 + +0.3 1,971,975 + +0.9 1,972,000 + -0.6 1,972,194 - +0.0 1,972,384 + MIT1002_01776 0.11 -0.3 1,972,464 - MIT1002_01776 0.21 +0.3 1,972,736 - MIT1002_01776 0.57 -0.0 1,972,817 + MIT1002_01776 0.68 +0.2 1,972,817 - MIT1002_01776 0.68 -1.0 1,972,900 + MIT1002_01776 0.79 +0.8 1,972,916 - MIT1002_01776 0.81 +1.1 1,972,979 + MIT1002_01776 0.89 -0.1 1,973,008 + +1.1 1,973,070 + -1.0 1,973,178 - +0.6 1,973,178 - -0.4 1,973,197 - -1.6 1,973,331 - MIT1002_01777 0.16 -1.8 1,973,339 - MIT1002_01777 0.17 -0.8 1,973,420 + MIT1002_01777 0.27 -0.2 1,973,520 - MIT1002_01777 0.39 -3.4 1,973,543 - MIT1002_01777 0.42 -2.9 1,973,681 - MIT1002_01777 0.59 -3.0 1,973,790 - MIT1002_01777 0.72 -3.7 1,973,790 - MIT1002_01777 0.72 -0.5 1,973,852 - MIT1002_01777 0.80 -1.2 1,973,865 + MIT1002_01777 0.82 -2.9 1,973,873 - MIT1002_01777 0.83 -4.1 1,973,902 + MIT1002_01777 0.86 -2.8 1,973,970 - -1.6 1,974,035 + -2.9 1,974,040 + -3.5 1,974,040 + -0.2
Or see this region's nucleotide sequence