Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01743

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01742 and MIT1002_01743 are separated by 195 nucleotidesMIT1002_01743 and MIT1002_01744 are separated by 128 nucleotides MIT1002_01742: MIT1002_01742 - putative sugar epimerase YhfK, at 1,933,752 to 1,934,384 _01742 MIT1002_01743: MIT1002_01743 - putative diguanylate cyclase YdaM, at 1,934,580 to 1,937,564 _01743 MIT1002_01744: MIT1002_01744 - Angiotensin-converting enzyme, at 1,937,693 to 1,939,513 _01744 Position (kb) 1934 1935 1936 1937 1938Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1933.582 kb on - strandat 1933.582 kb on - strandat 1933.605 kb on + strandat 1933.615 kb on + strandat 1933.627 kb on - strandat 1933.629 kb on + strandat 1933.631 kb on + strandat 1933.639 kb on - strandat 1933.639 kb on - strandat 1933.639 kb on - strandat 1933.693 kb on - strandat 1933.802 kb on + strandat 1933.805 kb on - strandat 1933.908 kb on + strand, within MIT1002_01742at 1933.939 kb on + strand, within MIT1002_01742at 1933.947 kb on - strand, within MIT1002_01742at 1933.954 kb on - strand, within MIT1002_01742at 1934.037 kb on + strand, within MIT1002_01742at 1934.042 kb on + strand, within MIT1002_01742at 1934.197 kb on + strand, within MIT1002_01742at 1934.197 kb on - strand, within MIT1002_01742at 1934.197 kb on - strand, within MIT1002_01742at 1934.205 kb on - strand, within MIT1002_01742at 1934.242 kb on + strand, within MIT1002_01742at 1934.250 kb on - strand, within MIT1002_01742at 1934.461 kb on - strandat 1934.488 kb on - strandat 1934.500 kb on - strandat 1934.537 kb on + strandat 1934.618 kb on + strandat 1934.710 kb on + strandat 1934.710 kb on + strandat 1934.710 kb on + strandat 1934.710 kb on + strandat 1934.718 kb on - strandat 1934.718 kb on - strandat 1934.720 kb on - strandat 1934.849 kb on + strandat 1934.886 kb on - strand, within MIT1002_01743at 1934.888 kb on + strand, within MIT1002_01743at 1934.888 kb on + strand, within MIT1002_01743at 1934.888 kb on + strand, within MIT1002_01743at 1934.893 kb on + strand, within MIT1002_01743at 1934.911 kb on - strand, within MIT1002_01743at 1935.009 kb on - strand, within MIT1002_01743at 1935.022 kb on - strand, within MIT1002_01743at 1935.042 kb on + strand, within MIT1002_01743at 1935.058 kb on + strand, within MIT1002_01743at 1935.058 kb on + strand, within MIT1002_01743at 1935.066 kb on - strand, within MIT1002_01743at 1935.089 kb on + strand, within MIT1002_01743at 1935.096 kb on - strand, within MIT1002_01743at 1935.124 kb on - strand, within MIT1002_01743at 1935.157 kb on + strand, within MIT1002_01743at 1935.158 kb on + strand, within MIT1002_01743at 1935.216 kb on + strand, within MIT1002_01743at 1935.232 kb on - strand, within MIT1002_01743at 1935.243 kb on + strand, within MIT1002_01743at 1935.268 kb on + strand, within MIT1002_01743at 1935.268 kb on + strand, within MIT1002_01743at 1935.287 kb on - strand, within MIT1002_01743at 1935.368 kb on - strand, within MIT1002_01743at 1935.395 kb on - strand, within MIT1002_01743at 1935.410 kb on - strand, within MIT1002_01743at 1935.413 kb on + strand, within MIT1002_01743at 1935.432 kb on + strand, within MIT1002_01743at 1935.539 kb on + strand, within MIT1002_01743at 1935.561 kb on - strand, within MIT1002_01743at 1935.562 kb on + strand, within MIT1002_01743at 1935.575 kb on + strand, within MIT1002_01743at 1935.676 kb on - strand, within MIT1002_01743at 1935.691 kb on + strand, within MIT1002_01743at 1935.699 kb on - strand, within MIT1002_01743at 1935.699 kb on - strand, within MIT1002_01743at 1935.699 kb on - strand, within MIT1002_01743at 1935.699 kb on - strand, within MIT1002_01743at 1935.699 kb on - strand, within MIT1002_01743at 1935.699 kb on - strand, within MIT1002_01743at 1935.699 kb on - strand, within MIT1002_01743at 1935.699 kb on - strand, within MIT1002_01743at 1935.731 kb on + strand, within MIT1002_01743at 1935.831 kb on + strand, within MIT1002_01743at 1935.860 kb on + strand, within MIT1002_01743at 1935.895 kb on + strand, within MIT1002_01743at 1935.927 kb on + strand, within MIT1002_01743at 1936.016 kb on - strand, within MIT1002_01743at 1936.121 kb on + strand, within MIT1002_01743at 1936.262 kb on - strand, within MIT1002_01743at 1936.277 kb on + strand, within MIT1002_01743at 1936.277 kb on + strand, within MIT1002_01743at 1936.297 kb on - strand, within MIT1002_01743at 1936.421 kb on + strand, within MIT1002_01743at 1936.518 kb on - strand, within MIT1002_01743at 1936.518 kb on - strand, within MIT1002_01743at 1936.531 kb on + strand, within MIT1002_01743at 1936.548 kb on + strand, within MIT1002_01743at 1936.582 kb on + strand, within MIT1002_01743at 1936.635 kb on + strand, within MIT1002_01743at 1936.654 kb on + strand, within MIT1002_01743at 1936.654 kb on + strand, within MIT1002_01743at 1936.657 kb on - strand, within MIT1002_01743at 1936.657 kb on - strand, within MIT1002_01743at 1936.662 kb on - strand, within MIT1002_01743at 1936.662 kb on - strand, within MIT1002_01743at 1936.662 kb on - strand, within MIT1002_01743at 1936.662 kb on - strand, within MIT1002_01743at 1936.662 kb on - strand, within MIT1002_01743at 1936.663 kb on - strand, within MIT1002_01743at 1936.818 kb on - strand, within MIT1002_01743at 1936.931 kb on + strand, within MIT1002_01743at 1936.936 kb on + strand, within MIT1002_01743at 1936.985 kb on + strand, within MIT1002_01743at 1937.002 kb on + strand, within MIT1002_01743at 1937.014 kb on + strand, within MIT1002_01743at 1937.033 kb on + strand, within MIT1002_01743at 1937.033 kb on + strand, within MIT1002_01743at 1937.033 kb on + strand, within MIT1002_01743at 1937.033 kb on + strand, within MIT1002_01743at 1937.033 kb on + strand, within MIT1002_01743at 1937.033 kb on + strand, within MIT1002_01743at 1937.033 kb on + strand, within MIT1002_01743at 1937.033 kb on + strand, within MIT1002_01743at 1937.033 kb on + strand, within MIT1002_01743at 1937.033 kb on + strand, within MIT1002_01743at 1937.041 kb on - strand, within MIT1002_01743at 1937.041 kb on - strand, within MIT1002_01743at 1937.041 kb on - strand, within MIT1002_01743at 1937.041 kb on - strand, within MIT1002_01743at 1937.043 kb on + strand, within MIT1002_01743at 1937.043 kb on + strand, within MIT1002_01743at 1937.051 kb on - strand, within MIT1002_01743at 1937.056 kb on - strand, within MIT1002_01743at 1937.062 kb on + strand, within MIT1002_01743at 1937.062 kb on + strand, within MIT1002_01743at 1937.086 kb on + strand, within MIT1002_01743at 1937.086 kb on + strand, within MIT1002_01743at 1937.086 kb on + strand, within MIT1002_01743at 1937.086 kb on + strand, within MIT1002_01743at 1937.086 kb on + strand, within MIT1002_01743at 1937.094 kb on - strand, within MIT1002_01743at 1937.094 kb on - strand, within MIT1002_01743at 1937.094 kb on - strand, within MIT1002_01743at 1937.094 kb on - strand, within MIT1002_01743at 1937.094 kb on - strand, within MIT1002_01743at 1937.110 kb on + strand, within MIT1002_01743at 1937.110 kb on + strand, within MIT1002_01743at 1937.110 kb on + strand, within MIT1002_01743at 1937.110 kb on + strand, within MIT1002_01743at 1937.110 kb on + strand, within MIT1002_01743at 1937.118 kb on - strand, within MIT1002_01743at 1937.118 kb on - strand, within MIT1002_01743at 1937.118 kb on - strand, within MIT1002_01743at 1937.118 kb on - strand, within MIT1002_01743at 1937.118 kb on - strand, within MIT1002_01743at 1937.144 kb on + strand, within MIT1002_01743at 1937.158 kb on + strand, within MIT1002_01743at 1937.161 kb on + strand, within MIT1002_01743at 1937.166 kb on - strand, within MIT1002_01743at 1937.177 kb on + strand, within MIT1002_01743at 1937.192 kb on + strand, within MIT1002_01743at 1937.219 kb on - strand, within MIT1002_01743at 1937.221 kb on + strand, within MIT1002_01743at 1937.270 kb on + strandat 1937.471 kb on - strandat 1937.524 kb on - strandat 1937.577 kb on + strandat 1937.577 kb on + strandat 1937.639 kb on + strandat 1937.659 kb on - strandat 1937.692 kb on - strandat 1937.754 kb on - strandat 1937.884 kb on - strand, within MIT1002_01744at 1937.884 kb on - strand, within MIT1002_01744at 1937.884 kb on - strand, within MIT1002_01744at 1937.913 kb on + strand, within MIT1002_01744at 1937.953 kb on - strand, within MIT1002_01744at 1937.989 kb on - strand, within MIT1002_01744at 1938.057 kb on + strand, within MIT1002_01744at 1938.057 kb on + strand, within MIT1002_01744at 1938.100 kb on + strand, within MIT1002_01744at 1938.100 kb on + strand, within MIT1002_01744at 1938.108 kb on - strand, within MIT1002_01744at 1938.108 kb on - strand, within MIT1002_01744at 1938.113 kb on - strand, within MIT1002_01744at 1938.182 kb on - strand, within MIT1002_01744at 1938.230 kb on - strand, within MIT1002_01744at 1938.265 kb on - strand, within MIT1002_01744at 1938.329 kb on + strand, within MIT1002_01744at 1938.479 kb on - strand, within MIT1002_01744at 1938.538 kb on - strand, within MIT1002_01744at 1938.549 kb on - strand, within MIT1002_01744

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
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1,933,582 - +1.8
1,933,582 - -0.2
1,933,605 + -1.5
1,933,615 + +1.4
1,933,627 - -0.7
1,933,629 + +0.8
1,933,631 + +0.2
1,933,639 - +0.2
1,933,639 - -0.1
1,933,639 - -2.3
1,933,693 - -0.7
1,933,802 + +0.2
1,933,805 - -1.0
1,933,908 + MIT1002_01742 0.25 +1.7
1,933,939 + MIT1002_01742 0.30 -1.1
1,933,947 - MIT1002_01742 0.31 +0.3
1,933,954 - MIT1002_01742 0.32 -0.5
1,934,037 + MIT1002_01742 0.45 +0.6
1,934,042 + MIT1002_01742 0.46 -0.5
1,934,197 + MIT1002_01742 0.70 +2.4
1,934,197 - MIT1002_01742 0.70 -0.0
1,934,197 - MIT1002_01742 0.70 +0.5
1,934,205 - MIT1002_01742 0.72 -0.2
1,934,242 + MIT1002_01742 0.77 +0.6
1,934,250 - MIT1002_01742 0.79 -1.6
1,934,461 - +0.1
1,934,488 - -0.9
1,934,500 - +0.0
1,934,537 + -1.0
1,934,618 + -0.4
1,934,710 + +0.8
1,934,710 + +1.6
1,934,710 + +0.6
1,934,710 + +0.0
1,934,718 - -0.6
1,934,718 - -3.5
1,934,720 - -1.0
1,934,849 + -2.3
1,934,886 - MIT1002_01743 0.10 -0.5
1,934,888 + MIT1002_01743 0.10 +0.6
1,934,888 + MIT1002_01743 0.10 +1.8
1,934,888 + MIT1002_01743 0.10 +0.3
1,934,893 + MIT1002_01743 0.10 +1.4
1,934,911 - MIT1002_01743 0.11 +0.1
1,935,009 - MIT1002_01743 0.14 -0.3
1,935,022 - MIT1002_01743 0.15 -0.4
1,935,042 + MIT1002_01743 0.15 -0.5
1,935,058 + MIT1002_01743 0.16 +0.8
1,935,058 + MIT1002_01743 0.16 +0.3
1,935,066 - MIT1002_01743 0.16 -0.4
1,935,089 + MIT1002_01743 0.17 -1.6
1,935,096 - MIT1002_01743 0.17 -0.8
1,935,124 - MIT1002_01743 0.18 -1.0
1,935,157 + MIT1002_01743 0.19 -2.6
1,935,158 + MIT1002_01743 0.19 +0.4
1,935,216 + MIT1002_01743 0.21 +1.3
1,935,232 - MIT1002_01743 0.22 +0.0
1,935,243 + MIT1002_01743 0.22 +1.0
1,935,268 + MIT1002_01743 0.23 -0.2
1,935,268 + MIT1002_01743 0.23 -1.1
1,935,287 - MIT1002_01743 0.24 -0.2
1,935,368 - MIT1002_01743 0.26 -1.5
1,935,395 - MIT1002_01743 0.27 -1.7
1,935,410 - MIT1002_01743 0.28 +0.2
1,935,413 + MIT1002_01743 0.28 +1.5
1,935,432 + MIT1002_01743 0.29 +2.1
1,935,539 + MIT1002_01743 0.32 +0.6
1,935,561 - MIT1002_01743 0.33 -0.2
1,935,562 + MIT1002_01743 0.33 -1.2
1,935,575 + MIT1002_01743 0.33 -0.7
1,935,676 - MIT1002_01743 0.37 +0.4
1,935,691 + MIT1002_01743 0.37 +0.5
1,935,699 - MIT1002_01743 0.37 -0.2
1,935,699 - MIT1002_01743 0.37 +0.3
1,935,699 - MIT1002_01743 0.37 -4.2
1,935,699 - MIT1002_01743 0.37 +0.2
1,935,699 - MIT1002_01743 0.37 +0.1
1,935,699 - MIT1002_01743 0.37 -0.2
1,935,699 - MIT1002_01743 0.37 +0.5
1,935,699 - MIT1002_01743 0.37 +2.1
1,935,731 + MIT1002_01743 0.39 +0.7
1,935,831 + MIT1002_01743 0.42 -0.6
1,935,860 + MIT1002_01743 0.43 +0.8
1,935,895 + MIT1002_01743 0.44 -0.2
1,935,927 + MIT1002_01743 0.45 -0.0
1,936,016 - MIT1002_01743 0.48 -1.2
1,936,121 + MIT1002_01743 0.52 -0.5
1,936,262 - MIT1002_01743 0.56 -2.6
1,936,277 + MIT1002_01743 0.57 -0.4
1,936,277 + MIT1002_01743 0.57 -0.2
1,936,297 - MIT1002_01743 0.58 -0.7
1,936,421 + MIT1002_01743 0.62 -1.4
1,936,518 - MIT1002_01743 0.65 +0.2
1,936,518 - MIT1002_01743 0.65 -2.4
1,936,531 + MIT1002_01743 0.65 -0.7
1,936,548 + MIT1002_01743 0.66 -0.5
1,936,582 + MIT1002_01743 0.67 +0.2
1,936,635 + MIT1002_01743 0.69 +0.1
1,936,654 + MIT1002_01743 0.69 +0.4
1,936,654 + MIT1002_01743 0.69 +0.7
1,936,657 - MIT1002_01743 0.70 -0.5
1,936,657 - MIT1002_01743 0.70 -1.9
1,936,662 - MIT1002_01743 0.70 -0.2
1,936,662 - MIT1002_01743 0.70 -1.7
1,936,662 - MIT1002_01743 0.70 +0.5
1,936,662 - MIT1002_01743 0.70 -0.2
1,936,662 - MIT1002_01743 0.70 -1.2
1,936,663 - MIT1002_01743 0.70 -1.0
1,936,818 - MIT1002_01743 0.75 +0.0
1,936,931 + MIT1002_01743 0.79 -2.1
1,936,936 + MIT1002_01743 0.79 -1.5
1,936,985 + MIT1002_01743 0.81 -0.5
1,937,002 + MIT1002_01743 0.81 -0.2
1,937,014 + MIT1002_01743 0.82 -1.6
1,937,033 + MIT1002_01743 0.82 +1.3
1,937,033 + MIT1002_01743 0.82 -0.4
1,937,033 + MIT1002_01743 0.82 +1.5
1,937,033 + MIT1002_01743 0.82 -0.3
1,937,033 + MIT1002_01743 0.82 -1.0
1,937,033 + MIT1002_01743 0.82 -2.6
1,937,033 + MIT1002_01743 0.82 -0.6
1,937,033 + MIT1002_01743 0.82 +0.3
1,937,033 + MIT1002_01743 0.82 -0.3
1,937,033 + MIT1002_01743 0.82 -0.2
1,937,041 - MIT1002_01743 0.82 +0.8
1,937,041 - MIT1002_01743 0.82 +1.0
1,937,041 - MIT1002_01743 0.82 -0.8
1,937,041 - MIT1002_01743 0.82 -0.7
1,937,043 + MIT1002_01743 0.83 -0.6
1,937,043 + MIT1002_01743 0.83 +0.0
1,937,051 - MIT1002_01743 0.83 -1.4
1,937,056 - MIT1002_01743 0.83 -2.0
1,937,062 + MIT1002_01743 0.83 -0.9
1,937,062 + MIT1002_01743 0.83 -1.2
1,937,086 + MIT1002_01743 0.84 +0.4
1,937,086 + MIT1002_01743 0.84 +0.2
1,937,086 + MIT1002_01743 0.84 +0.8
1,937,086 + MIT1002_01743 0.84 -0.1
1,937,086 + MIT1002_01743 0.84 +1.8
1,937,094 - MIT1002_01743 0.84 -0.8
1,937,094 - MIT1002_01743 0.84 +0.4
1,937,094 - MIT1002_01743 0.84 -0.0
1,937,094 - MIT1002_01743 0.84 -0.7
1,937,094 - MIT1002_01743 0.84 -1.6
1,937,110 + MIT1002_01743 0.85 -1.0
1,937,110 + MIT1002_01743 0.85 +0.1
1,937,110 + MIT1002_01743 0.85 -0.6
1,937,110 + MIT1002_01743 0.85 +0.6
1,937,110 + MIT1002_01743 0.85 +0.1
1,937,118 - MIT1002_01743 0.85 -0.3
1,937,118 - MIT1002_01743 0.85 -0.5
1,937,118 - MIT1002_01743 0.85 -1.1
1,937,118 - MIT1002_01743 0.85 -0.5
1,937,118 - MIT1002_01743 0.85 -0.4
1,937,144 + MIT1002_01743 0.86 +1.0
1,937,158 + MIT1002_01743 0.86 +0.9
1,937,161 + MIT1002_01743 0.86 +0.3
1,937,166 - MIT1002_01743 0.87 -1.8
1,937,177 + MIT1002_01743 0.87 +0.2
1,937,192 + MIT1002_01743 0.88 +1.0
1,937,219 - MIT1002_01743 0.88 +0.5
1,937,221 + MIT1002_01743 0.88 -0.2
1,937,270 + -0.7
1,937,471 - +0.8
1,937,524 - -0.1
1,937,577 + -1.3
1,937,577 + +0.1
1,937,639 + -1.4
1,937,659 - -0.6
1,937,692 - +0.1
1,937,754 - -1.3
1,937,884 - MIT1002_01744 0.10 +0.5
1,937,884 - MIT1002_01744 0.10 +0.3
1,937,884 - MIT1002_01744 0.10 -0.0
1,937,913 + MIT1002_01744 0.12 -0.3
1,937,953 - MIT1002_01744 0.14 -0.5
1,937,989 - MIT1002_01744 0.16 +0.5
1,938,057 + MIT1002_01744 0.20 -0.0
1,938,057 + MIT1002_01744 0.20 -0.4
1,938,100 + MIT1002_01744 0.22 +2.7
1,938,100 + MIT1002_01744 0.22 -0.3
1,938,108 - MIT1002_01744 0.23 +0.7
1,938,108 - MIT1002_01744 0.23 +1.4
1,938,113 - MIT1002_01744 0.23 -0.5
1,938,182 - MIT1002_01744 0.27 +0.3
1,938,230 - MIT1002_01744 0.29 +0.7
1,938,265 - MIT1002_01744 0.31 -0.8
1,938,329 + MIT1002_01744 0.35 -0.8
1,938,479 - MIT1002_01744 0.43 -2.4
1,938,538 - MIT1002_01744 0.46 +1.4
1,938,549 - MIT1002_01744 0.47 +1.1

Or see this region's nucleotide sequence