Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01603

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01602 and MIT1002_01603 are separated by 447 nucleotidesMIT1002_01603 and MIT1002_01604 are separated by 216 nucleotidesMIT1002_01604 and MIT1002_01605 are separated by 118 nucleotidesMIT1002_01605 and MIT1002_01606 are separated by 18 nucleotides MIT1002_01602: MIT1002_01602 - Fructosamine-3-kinase, at 1,765,155 to 1,766,039 _01602 MIT1002_01603: MIT1002_01603 - Threonine--tRNA ligase, at 1,766,487 to 1,768,403 _01603 MIT1002_01604: MIT1002_01604 - Translation initiation factor IF-3, at 1,768,620 to 1,769,054 _01604 MIT1002_01605: MIT1002_01605 - Ribosomal protein A, at 1,769,173 to 1,769,370 _01605 MIT1002_01606: MIT1002_01606 - 50S ribosomal protein L20, at 1,769,389 to 1,769,745 _01606 Position (kb) 1766 1767 1768 1769Strain fitness (log2 ratio) -2 -1 0 1 2at 1765.602 kb on - strand, within MIT1002_01602at 1765.655 kb on + strand, within MIT1002_01602at 1765.666 kb on + strand, within MIT1002_01602at 1765.671 kb on + strand, within MIT1002_01602at 1765.671 kb on + strand, within MIT1002_01602at 1765.679 kb on - strand, within MIT1002_01602at 1765.825 kb on - strand, within MIT1002_01602at 1765.941 kb on + strand, within MIT1002_01602at 1765.975 kb on + strandat 1766.086 kb on + strandat 1766.112 kb on + strandat 1766.112 kb on + strandat 1766.114 kb on + strandat 1766.120 kb on - strandat 1766.120 kb on - strandat 1766.120 kb on - strandat 1766.154 kb on - strandat 1766.222 kb on + strandat 1766.245 kb on + strandat 1766.301 kb on + strandat 1766.376 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
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1,765,602 - MIT1002_01602 0.51 +0.4
1,765,655 + MIT1002_01602 0.56 +1.6
1,765,666 + MIT1002_01602 0.58 -0.7
1,765,671 + MIT1002_01602 0.58 +0.6
1,765,671 + MIT1002_01602 0.58 +1.9
1,765,679 - MIT1002_01602 0.59 -0.7
1,765,825 - MIT1002_01602 0.76 +1.4
1,765,941 + MIT1002_01602 0.89 -0.4
1,765,975 + +0.8
1,766,086 + +0.3
1,766,112 + +0.4
1,766,112 + +1.0
1,766,114 + -0.3
1,766,120 - -0.8
1,766,120 - +0.0
1,766,120 - +0.4
1,766,154 - +0.9
1,766,222 + +0.1
1,766,245 + +0.8
1,766,301 + -1.9
1,766,376 + +0.4

Or see this region's nucleotide sequence