Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01349

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
1,490,619	-		MIT1002_01348	0.32	+0.7
1,490,645	-		MIT1002_01348	0.34	+0.9
1,490,650	-		MIT1002_01348	0.35	-1.4
1,490,743	-		MIT1002_01348	0.44	-0.0
1,490,743	-		MIT1002_01348	0.44	-0.1
1,490,745	+		MIT1002_01348	0.44	+0.9
1,490,745	+		MIT1002_01348	0.44	-0.6
1,490,753	-		MIT1002_01348	0.45	-0.3
1,490,758	-		MIT1002_01348	0.45	+1.2
1,490,805	-		MIT1002_01348	0.50	+0.3
1,490,826	+		MIT1002_01348	0.52	-0.6
1,490,845	+		MIT1002_01348	0.54	+0.3
1,490,872	+		MIT1002_01348	0.57	+0.5
1,490,898	+		MIT1002_01348	0.59	-2.0
1,490,906	-		MIT1002_01348	0.60	-1.4
1,490,906	-		MIT1002_01348	0.60	+0.0
1,491,004	-		MIT1002_01348	0.70	+0.9
1,491,006	+		MIT1002_01348	0.70	+0.8
1,491,089	-		MIT1002_01348	0.78	+1.1
1,491,220	+				+0.5
1,491,227	+				-2.0
1,491,251	-				-0.7
1,491,252	+				-0.1
1,491,282	-				+1.0
1,491,397	+				-0.9
1,491,407	-				+1.8
1,491,407	-				+1.1
1,491,475	+				-0.3
1,491,520	-				+2.0
1,491,526	+				-1.9
1,491,580	-				-0.8
1,491,606	-		MIT1002_01349	0.11	+1.1
1,491,612	+		MIT1002_01349	0.11	-3.2
1,491,612	+		MIT1002_01349	0.11	-0.2
1,491,620	-		MIT1002_01349	0.12	+1.2
1,491,665	-		MIT1002_01349	0.16	+0.3
1,491,665	-		MIT1002_01349	0.16	-0.8
1,491,691	+		MIT1002_01349	0.18	+1.3
1,491,742	-		MIT1002_01349	0.22	-2.3
1,491,779	+		MIT1002_01349	0.25	-0.7
1,491,786	-		MIT1002_01349	0.26	+0.8
1,491,789	+		MIT1002_01349	0.26	-1.7
1,491,810	+		MIT1002_01349	0.28	+1.9
1,491,810	+		MIT1002_01349	0.28	+0.1
1,491,810	+		MIT1002_01349	0.28	+1.3
1,491,818	-		MIT1002_01349	0.29	-0.3
1,491,832	+		MIT1002_01349	0.30	-0.2
1,491,847	+		MIT1002_01349	0.31	-1.7
1,491,855	-		MIT1002_01349	0.32	+0.3
1,491,862	+		MIT1002_01349	0.32	+1.5
1,491,870	-		MIT1002_01349	0.33	+1.0
1,491,876	+		MIT1002_01349	0.34	+1.3
1,491,884	-		MIT1002_01349	0.34	-0.6
1,491,891	+		MIT1002_01349	0.35	+0.1
1,491,901	-		MIT1002_01349	0.36	-0.1
1,492,036	-		MIT1002_01349	0.47	+0.3
1,492,046	-		MIT1002_01349	0.48	+0.5
1,492,086	-		MIT1002_01349	0.51	+0.3
1,492,167	-		MIT1002_01349	0.58	-1.5
1,492,167	-		MIT1002_01349	0.58	-0.2
1,492,167	-		MIT1002_01349	0.58	+0.1
1,492,167	-		MIT1002_01349	0.58	-0.1
1,492,167	-		MIT1002_01349	0.58	+0.1
1,492,276	-		MIT1002_01349	0.67	-1.4
1,492,398	+		MIT1002_01349	0.77	-0.0
1,492,454	-		MIT1002_01349	0.82	-1.5
1,492,464	+		MIT1002_01349	0.83	+2.1
1,492,490	+		MIT1002_01349	0.85	+1.0
1,492,498	-		MIT1002_01349	0.86	+2.6
1,492,506	-		MIT1002_01349	0.86	-0.4
1,492,543	-		MIT1002_01349	0.90	-0.3
1,492,582	+				+0.9
1,492,582	+				+0.5
1,492,633	+				+0.4
1,492,638	+				-2.7
1,492,641	-				+0.7
1,492,641	-				+0.5
1,492,643	+				-0.5
1,492,720	-				-0.4
1,492,737	-				+0.1
1,492,789	+				+0.7
1,493,065	+		MIT1002_01350	0.16	+0.5
1,493,065	+		MIT1002_01350	0.16	+0.3
1,493,065	+		MIT1002_01350	0.16	+0.1
1,493,183	+		MIT1002_01350	0.21	+0.1
1,493,191	-		MIT1002_01350	0.21	-1.4
1,493,194	+		MIT1002_01350	0.21	+0.8
1,493,202	+		MIT1002_01350	0.21	-2.4
1,493,202	+		MIT1002_01350	0.21	+1.3
1,493,209	-		MIT1002_01350	0.22	-0.7
1,493,210	-		MIT1002_01350	0.22	-1.4
1,493,210	-		MIT1002_01350	0.22	-2.4
1,493,239	+		MIT1002_01350	0.23	+0.2
1,493,319	+		MIT1002_01350	0.26	+0.4
1,493,319	+		MIT1002_01350	0.26	-0.3
1,493,319	+		MIT1002_01350	0.26	-0.1
1,493,327	-		MIT1002_01350	0.26	-1.4
1,493,489	+		MIT1002_01350	0.33	+1.2
1,493,498	-		MIT1002_01350	0.33	-0.7
1,493,543	+		MIT1002_01350	0.35	+1.5
1,493,576	+		MIT1002_01350	0.37	+0.3