Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01083

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
1,189,756	-		MIT1002_01082	0.14	+0.7
1,189,873	-		MIT1002_01082	0.24	-0.0
1,189,873	-		MIT1002_01082	0.24	-1.1
1,189,880	+		MIT1002_01082	0.25	+0.1
1,189,888	-		MIT1002_01082	0.26	+0.1
1,189,888	-		MIT1002_01082	0.26	-1.7
1,189,888	-		MIT1002_01082	0.26	+0.4
1,189,888	-		MIT1002_01082	0.26	+0.3
1,189,888	-		MIT1002_01082	0.26	+1.4
1,189,888	-		MIT1002_01082	0.26	-0.6
1,189,895	-		MIT1002_01082	0.26	+1.1
1,190,030	+		MIT1002_01082	0.38	-1.3
1,190,038	-		MIT1002_01082	0.39	+1.1
1,190,038	-		MIT1002_01082	0.39	+0.1
1,190,107	+		MIT1002_01082	0.45	-1.6
1,190,107	+		MIT1002_01082	0.45	+0.1
1,190,115	-		MIT1002_01082	0.46	+0.7
1,190,189	+		MIT1002_01082	0.52	+0.7
1,190,197	-		MIT1002_01082	0.53	-1.0
1,190,197	-		MIT1002_01082	0.53	-1.2
1,190,211	+		MIT1002_01082	0.54	+0.4
1,190,226	+		MIT1002_01082	0.55	-0.5
1,190,305	+		MIT1002_01082	0.62	+0.2
1,190,381	+		MIT1002_01082	0.69	-0.3
1,190,475	-		MIT1002_01082	0.77	-0.5
1,190,584	+		MIT1002_01082	0.87	-1.8
1,190,584	+		MIT1002_01082	0.87	+2.1
1,190,585	+		MIT1002_01082	0.87	-1.5
1,190,591	+		MIT1002_01082	0.87	+0.9
1,190,599	-		MIT1002_01082	0.88	-0.0
1,190,601	+		MIT1002_01082	0.88	-0.2
1,190,601	+		MIT1002_01082	0.88	-0.7
1,190,601	+		MIT1002_01082	0.88	-0.8
1,190,629	+				+0.5
1,190,687	-				-1.1
1,190,709	-				-0.0
1,190,725	-				+0.7
1,190,736	+				-0.0
1,190,736	+				-0.1
1,190,736	+				+0.1
1,190,736	+				+0.7
1,190,736	+				-0.8
1,190,736	+				-0.8
1,190,736	+				-3.3
1,190,744	-				+0.4
1,190,744	-				+0.0
1,190,744	-				-1.8
1,190,792	+				-0.3
1,190,800	-				-2.2
1,190,800	-				+2.4
1,190,800	-				-2.1
1,190,807	+				-0.3
1,190,807	+				-0.2
1,190,807	+				+0.1
1,190,815	-				-1.0
1,190,861	+				+0.1
1,190,937	+		MIT1002_01083	0.14	+0.7
1,190,945	-		MIT1002_01083	0.14	+0.7
1,190,945	-		MIT1002_01083	0.14	+0.4
1,190,947	+		MIT1002_01083	0.14	-0.9
1,190,997	-		MIT1002_01083	0.18	-1.6
1,190,999	+		MIT1002_01083	0.18	+0.4
1,191,017	-		MIT1002_01083	0.20	-0.8
1,191,042	+		MIT1002_01083	0.22	-1.9
1,191,176	-		MIT1002_01083	0.32	-2.6
1,191,244	-		MIT1002_01083	0.37	-0.4
1,191,290	-		MIT1002_01083	0.40	+1.7
1,191,365	+		MIT1002_01083	0.46	+1.0
1,191,370	+		MIT1002_01083	0.46	-1.3
1,191,380	+		MIT1002_01083	0.47	+0.1
1,191,383	-		MIT1002_01083	0.47	+0.4
1,191,410	+		MIT1002_01083	0.49	+1.5
1,191,410	+		MIT1002_01083	0.49	+0.0
1,191,418	-		MIT1002_01083	0.50	+0.2
1,191,605	+		MIT1002_01083	0.64	+1.4
1,191,626	-		MIT1002_01083	0.65	-0.0
1,191,714	-		MIT1002_01083	0.72	-0.4
1,191,719	+		MIT1002_01083	0.72	+0.3
1,191,749	-		MIT1002_01083	0.74	+0.1
1,191,897	-		MIT1002_01083	0.86	+0.2
1,191,897	-		MIT1002_01083	0.86	+0.4
1,191,924	+		MIT1002_01083	0.88	-0.0
1,191,938	-		MIT1002_01083	0.89	+0.5
1,191,938	-		MIT1002_01083	0.89	+0.4
1,191,938	-		MIT1002_01083	0.89	-2.0
1,191,948	-		MIT1002_01083	0.89	-0.8
1,191,953	-		MIT1002_01083	0.90	+0.3
1,191,972	+				-0.5
1,191,994	+				-1.4
1,192,002	-				-0.4
1,192,071	+				-0.4
1,192,079	-				+0.3
1,192,095	+				-1.8
1,192,271	+				-1.7
1,192,292	-				+0.3
1,192,292	-				+0.1
1,192,300	-				+0.3
1,192,326	-				+0.1
1,192,345	-				+1.5
1,192,350	+				-0.2
1,192,431	+		MIT1002_01084	0.29	-1.9
1,192,553	-		MIT1002_01084	0.66	-1.9
1,192,553	-		MIT1002_01084	0.66	-1.0
1,192,565	-		MIT1002_01084	0.69	+1.0
1,192,569	-		MIT1002_01084	0.71	-0.6
1,192,614	-		MIT1002_01084	0.84	-1.0
1,192,695	+				-1.8
1,192,696	+				+0.4
1,192,704	-				-2.7
1,192,711	-				-0.1
1,192,721	+				+0.2
1,192,729	-				+1.2
1,192,771	+				-0.4
1,192,771	+				+2.5
1,192,771	+				+1.7
1,192,798	+				+1.1
1,192,900	+		MIT1002_01085	0.13	+1.5
1,192,900	+		MIT1002_01085	0.13	+0.2
1,192,955	+		MIT1002_01085	0.16	+0.4
1,192,969	-		MIT1002_01085	0.17	-1.5