Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00949

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
1,050,730	-		MIT1002_00948	0.10	-6.6
1,050,781	+		MIT1002_00948	0.15	-1.8
1,050,791	+		MIT1002_00948	0.16	-3.8
1,050,837	-		MIT1002_00948	0.20	-4.4
1,050,837	-		MIT1002_00948	0.20	-1.6
1,050,881	+		MIT1002_00948	0.24	-3.3
1,050,881	+		MIT1002_00948	0.24	-2.2
1,050,889	-		MIT1002_00948	0.25	-2.9
1,050,974	+		MIT1002_00948	0.33	-8.0
1,050,974	+		MIT1002_00948	0.33	-4.1
1,050,986	+		MIT1002_00948	0.34	-4.9
1,050,991	+		MIT1002_00948	0.34	-2.2
1,050,999	-		MIT1002_00948	0.35	-4.7
1,051,001	+		MIT1002_00948	0.35	-5.1
1,051,004	-		MIT1002_00948	0.35	-2.7
1,051,017	+		MIT1002_00948	0.37	-3.6
1,051,039	+		MIT1002_00948	0.39	-1.9
1,051,039	+		MIT1002_00948	0.39	-4.4
1,051,055	+		MIT1002_00948	0.40	-1.2
1,051,129	+		MIT1002_00948	0.47	-3.2
1,051,161	+		MIT1002_00948	0.50	-2.2
1,051,161	+		MIT1002_00948	0.50	-8.6
1,051,171	+		MIT1002_00948	0.51	-4.8
1,051,179	-		MIT1002_00948	0.51	-8.5
1,051,239	+		MIT1002_00948	0.57	-3.3
1,051,380	-		MIT1002_00948	0.70	-4.5
1,051,404	-		MIT1002_00948	0.72	-1.7
1,051,404	-		MIT1002_00948	0.72	-4.9
1,051,406	+		MIT1002_00948	0.72	-5.1
1,051,425	+		MIT1002_00948	0.74	-1.0
1,051,449	-		MIT1002_00948	0.76	-4.5
1,051,450	-		MIT1002_00948	0.76	-1.6
1,051,478	-		MIT1002_00948	0.79	-4.2
1,051,483	-		MIT1002_00948	0.79	-6.4
1,051,492	-		MIT1002_00948	0.80	-3.2
1,051,522	+		MIT1002_00948	0.83	-3.8
1,051,524	+		MIT1002_00948	0.83	-2.0
1,051,542	+		MIT1002_00948	0.84	-1.6
1,051,598	+		MIT1002_00948	0.90	-4.7
1,051,633	+				-5.3
1,051,669	-				-2.4
1,051,669	-				-3.2
1,051,718	-				-1.5
1,051,718	-				-3.3
1,051,774	+				+0.0
1,051,799	-				-3.1
1,051,962	+		MIT1002_00949	0.16	-1.2
1,051,962	-		MIT1002_00949	0.16	-0.3
1,052,002	+		MIT1002_00949	0.19	-4.6
1,052,082	-		MIT1002_00949	0.24	-3.3
1,052,143	+		MIT1002_00949	0.28	-1.8
1,052,152	-		MIT1002_00949	0.28	-2.9
1,052,152	-		MIT1002_00949	0.28	-3.2
1,052,197	+		MIT1002_00949	0.31	-3.4
1,052,225	-		MIT1002_00949	0.33	-1.5
1,052,225	-		MIT1002_00949	0.33	-0.8
1,052,291	+		MIT1002_00949	0.37	-3.4
1,052,367	+		MIT1002_00949	0.42	-7.0
1,052,372	+		MIT1002_00949	0.42	-3.0
1,052,386	-		MIT1002_00949	0.43	-3.7
1,052,459	+		MIT1002_00949	0.48	-3.7
1,052,459	+		MIT1002_00949	0.48	-3.8
1,052,459	+		MIT1002_00949	0.48	-4.1
1,052,459	+		MIT1002_00949	0.48	-5.6
1,052,459	+		MIT1002_00949	0.48	-1.6
1,052,459	+		MIT1002_00949	0.48	-3.7
1,052,459	+		MIT1002_00949	0.48	-5.2
1,052,459	+		MIT1002_00949	0.48	-2.2
1,052,459	+		MIT1002_00949	0.48	-3.3
1,052,459	+		MIT1002_00949	0.48	-6.8
1,052,459	+		MIT1002_00949	0.48	-2.5
1,052,467	-		MIT1002_00949	0.48	-6.3
1,052,467	-		MIT1002_00949	0.48	-1.3
1,052,467	-		MIT1002_00949	0.48	-2.0
1,052,467	-		MIT1002_00949	0.48	-4.1
1,052,467	-		MIT1002_00949	0.48	-2.2
1,052,467	-		MIT1002_00949	0.48	-3.5
1,052,467	-		MIT1002_00949	0.48	-4.8
1,052,485	+		MIT1002_00949	0.49	-6.6
1,052,524	-		MIT1002_00949	0.52	-0.3
1,052,573	+		MIT1002_00949	0.55	-3.3
1,052,581	-		MIT1002_00949	0.56	-3.2
1,052,601	-		MIT1002_00949	0.57	-4.7
1,052,603	+		MIT1002_00949	0.57	-3.9
1,052,603	+		MIT1002_00949	0.57	-4.0
1,052,611	-		MIT1002_00949	0.58	-4.3
1,052,738	+		MIT1002_00949	0.66	-4.9
1,052,744	+		MIT1002_00949	0.66	-2.9
1,052,753	+		MIT1002_00949	0.67	-5.1
1,052,763	+		MIT1002_00949	0.67	-3.6
1,052,849	+		MIT1002_00949	0.73	-3.2
1,052,875	+		MIT1002_00949	0.74	-8.8
1,052,951	-		MIT1002_00949	0.79	-3.6
1,052,960	-		MIT1002_00949	0.80	-5.9
1,052,961	-		MIT1002_00949	0.80	-1.3
1,052,971	+		MIT1002_00949	0.81	-3.7
1,053,013	-		MIT1002_00949	0.83	-4.4
1,053,014	-		MIT1002_00949	0.83	-4.8
1,053,073	-		MIT1002_00949	0.87	-4.3
1,053,080	-		MIT1002_00949	0.88	-3.2
1,053,093	+		MIT1002_00949	0.88	-2.3
1,053,093	+		MIT1002_00949	0.88	-3.8
1,053,101	-		MIT1002_00949	0.89	-6.4
1,053,101	-		MIT1002_00949	0.89	-4.0
1,053,101	-		MIT1002_00949	0.89	-2.9
1,053,103	+		MIT1002_00949	0.89	-4.5
1,053,111	-		MIT1002_00949	0.90	-6.1
1,053,162	-				-2.3
1,053,222	-				-5.5
1,053,222	-				-1.6
1,053,227	-				-4.0
1,053,371	-				-0.5
1,053,463	-				-1.6
1,053,463	-				-2.9
1,053,470	-				-3.2
1,053,472	+				-1.2
1,053,736	-				+0.2
1,053,746	-				-1.9
1,053,770	-				-0.1
1,053,787	+				+0.4
1,053,829	-		MIT1002_00950	0.14	-1.7
1,053,858	+		MIT1002_00950	0.18	+2.4
1,053,874	-		MIT1002_00950	0.20	-1.2
1,053,930	-		MIT1002_00950	0.28	-0.8
1,053,944	-		MIT1002_00950	0.30	-0.5
1,053,948	+		MIT1002_00950	0.30	-0.3
1,053,985	+		MIT1002_00950	0.36	+0.0
1,053,992	+		MIT1002_00950	0.36	+0.1
1,053,997	-		MIT1002_00950	0.37	-0.4
1,054,019	+		MIT1002_00950	0.40	-0.3
1,054,083	-		MIT1002_00950	0.49	-0.3
1,054,131	+		MIT1002_00950	0.55	+0.0
1,054,131	+		MIT1002_00950	0.55	-0.0
1,054,146	+		MIT1002_00950	0.57	+0.4
1,054,200	+		MIT1002_00950	0.65	+0.3