Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00884 and MIT1002_00885 are separated by 100 nucleotides MIT1002_00885 and MIT1002_00886 are separated by 46 nucleotides MIT1002_00886 and MIT1002_00887 are separated by 24 nucleotides
MIT1002_00884: MIT1002_00884 - hypothetical protein, at 975,905 to 976,846
_00884
MIT1002_00885: MIT1002_00885 - hypothetical protein, at 976,947 to 977,474
_00885
MIT1002_00886: MIT1002_00886 - hemolysin, at 977,521 to 978,195
_00886
MIT1002_00887: MIT1002_00887 - hypothetical protein, at 978,220 to 978,459
_00887
Position (kb) 976
977
978 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 975.961 kb on + strand at 976.097 kb on + strand, within MIT1002_00884 at 976.194 kb on + strand, within MIT1002_00884 at 976.429 kb on + strand, within MIT1002_00884 at 976.479 kb on + strand, within MIT1002_00884 at 976.672 kb on - strand, within MIT1002_00884 at 976.867 kb on + strand at 976.968 kb on + strand at 976.999 kb on + strand at 976.999 kb on + strand at 977.024 kb on + strand, within MIT1002_00885 at 977.039 kb on - strand, within MIT1002_00885 at 977.111 kb on + strand, within MIT1002_00885 at 977.119 kb on - strand, within MIT1002_00885 at 977.119 kb on - strand, within MIT1002_00885 at 977.139 kb on - strand, within MIT1002_00885 at 977.186 kb on - strand, within MIT1002_00885 at 977.255 kb on - strand, within MIT1002_00885 at 977.275 kb on + strand, within MIT1002_00885 at 977.299 kb on - strand, within MIT1002_00885 at 977.301 kb on + strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.309 kb on - strand, within MIT1002_00885 at 977.319 kb on + strand, within MIT1002_00885 at 977.321 kb on + strand, within MIT1002_00885 at 977.321 kb on + strand, within MIT1002_00885 at 977.335 kb on + strand, within MIT1002_00885 at 977.335 kb on + strand, within MIT1002_00885 at 977.343 kb on - strand, within MIT1002_00885 at 977.343 kb on - strand, within MIT1002_00885 at 977.343 kb on - strand, within MIT1002_00885 at 977.390 kb on - strand, within MIT1002_00885 at 977.431 kb on + strand at 977.639 kb on - strand, within MIT1002_00886 at 977.676 kb on - strand, within MIT1002_00886 at 977.686 kb on - strand, within MIT1002_00886 at 977.702 kb on + strand, within MIT1002_00886 at 977.707 kb on + strand, within MIT1002_00886 at 977.708 kb on + strand, within MIT1002_00886 at 977.713 kb on + strand, within MIT1002_00886 at 977.714 kb on - strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.770 kb on + strand, within MIT1002_00886 at 977.778 kb on - strand, within MIT1002_00886 at 977.840 kb on - strand, within MIT1002_00886 at 977.933 kb on + strand, within MIT1002_00886 at 977.994 kb on + strand, within MIT1002_00886 at 978.001 kb on + strand, within MIT1002_00886 at 978.084 kb on + strand, within MIT1002_00886 at 978.104 kb on - strand, within MIT1002_00886 at 978.104 kb on - strand, within MIT1002_00886 at 978.104 kb on - strand, within MIT1002_00886 at 978.123 kb on + strand, within MIT1002_00886 at 978.128 kb on + strand at 978.128 kb on + strand at 978.136 kb on - strand at 978.136 kb on - strand at 978.243 kb on + strand at 978.335 kb on - strand, within MIT1002_00887
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 975,961 + -4.0 976,097 + MIT1002_00884 0.20 -3.3 976,194 + MIT1002_00884 0.31 -1.7 976,429 + MIT1002_00884 0.56 -2.1 976,479 + MIT1002_00884 0.61 -0.8 976,672 - MIT1002_00884 0.81 -1.1 976,867 + +1.5 976,968 + -1.0 976,999 + -0.4 976,999 + +1.2 977,024 + MIT1002_00885 0.15 +1.2 977,039 - MIT1002_00885 0.17 +0.7 977,111 + MIT1002_00885 0.31 +1.8 977,119 - MIT1002_00885 0.33 -0.2 977,119 - MIT1002_00885 0.33 +1.3 977,139 - MIT1002_00885 0.36 +2.0 977,186 - MIT1002_00885 0.45 -1.0 977,255 - MIT1002_00885 0.58 +0.4 977,275 + MIT1002_00885 0.62 -0.2 977,299 - MIT1002_00885 0.67 +1.9 977,301 + MIT1002_00885 0.67 -0.5 977,309 - MIT1002_00885 0.69 +0.4 977,309 - MIT1002_00885 0.69 -0.3 977,309 - MIT1002_00885 0.69 +0.3 977,309 - MIT1002_00885 0.69 -0.6 977,319 + MIT1002_00885 0.70 +1.0 977,321 + MIT1002_00885 0.71 +0.5 977,321 + MIT1002_00885 0.71 +0.0 977,335 + MIT1002_00885 0.73 -0.2 977,335 + MIT1002_00885 0.73 +0.7 977,343 - MIT1002_00885 0.75 -0.5 977,343 - MIT1002_00885 0.75 -2.0 977,343 - MIT1002_00885 0.75 -2.4 977,390 - MIT1002_00885 0.84 +0.5 977,431 + +0.1 977,639 - MIT1002_00886 0.17 +1.5 977,676 - MIT1002_00886 0.23 +0.5 977,686 - MIT1002_00886 0.24 -1.2 977,702 + MIT1002_00886 0.27 -1.3 977,707 + MIT1002_00886 0.28 +0.8 977,708 + MIT1002_00886 0.28 -0.2 977,713 + MIT1002_00886 0.28 +0.0 977,714 - MIT1002_00886 0.29 +0.4 977,770 + MIT1002_00886 0.37 +0.3 977,770 + MIT1002_00886 0.37 +0.3 977,770 + MIT1002_00886 0.37 -0.8 977,778 - MIT1002_00886 0.38 -1.3 977,840 - MIT1002_00886 0.47 -0.8 977,933 + MIT1002_00886 0.61 -1.9 977,994 + MIT1002_00886 0.70 -2.2 978,001 + MIT1002_00886 0.71 -0.4 978,084 + MIT1002_00886 0.83 -0.5 978,104 - MIT1002_00886 0.86 -0.4 978,104 - MIT1002_00886 0.86 -0.9 978,104 - MIT1002_00886 0.86 +0.6 978,123 + MIT1002_00886 0.89 -2.0 978,128 + -0.1 978,128 + +0.7 978,136 - +0.1 978,136 - -1.3 978,243 + -1.6 978,335 - MIT1002_00887 0.48 +0.3
Or see this region's nucleotide sequence