Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00884

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMIT1002_00882 and MIT1002_00883 overlap by 1 nucleotidesMIT1002_00883 and MIT1002_00884 are separated by 17 nucleotidesMIT1002_00884 and MIT1002_00885 are separated by 100 nucleotidesMIT1002_00885 and MIT1002_00886 are separated by 46 nucleotides MIT1002_00882: MIT1002_00882 - Sigma-W factor, at 974,599 to 975,129 _00882 MIT1002_00883: MIT1002_00883 - putative transmembrane transcriptional regulator (anti-sigma factor), at 975,129 to 975,887 _00883 MIT1002_00884: MIT1002_00884 - hypothetical protein, at 975,905 to 976,846 _00884 MIT1002_00885: MIT1002_00885 - hypothetical protein, at 976,947 to 977,474 _00885 MIT1002_00886: MIT1002_00886 - hemolysin, at 977,521 to 978,195 _00886 Position (kb) 975 976 977Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 974.909 kb on - strand, within MIT1002_00882at 974.949 kb on + strand, within MIT1002_00882at 974.949 kb on + strand, within MIT1002_00882at 974.952 kb on - strand, within MIT1002_00882at 974.957 kb on + strand, within MIT1002_00882at 974.957 kb on - strand, within MIT1002_00882at 974.957 kb on - strand, within MIT1002_00882at 974.957 kb on - strand, within MIT1002_00882at 974.971 kb on + strand, within MIT1002_00882at 974.971 kb on + strand, within MIT1002_00882at 974.978 kb on + strand, within MIT1002_00882at 975.087 kb on + strandat 975.097 kb on + strandat 975.150 kb on + strandat 975.300 kb on + strand, within MIT1002_00883at 975.462 kb on - strand, within MIT1002_00883at 975.574 kb on + strand, within MIT1002_00883at 975.631 kb on + strand, within MIT1002_00883at 975.655 kb on - strand, within MIT1002_00883at 975.670 kb on - strand, within MIT1002_00883at 975.782 kb on + strand, within MIT1002_00883at 975.862 kb on + strandat 975.934 kb on + strandat 975.961 kb on + strandat 976.097 kb on + strand, within MIT1002_00884at 976.194 kb on + strand, within MIT1002_00884at 976.429 kb on + strand, within MIT1002_00884at 976.479 kb on + strand, within MIT1002_00884at 976.672 kb on - strand, within MIT1002_00884at 976.867 kb on + strandat 976.968 kb on + strandat 976.999 kb on + strandat 976.999 kb on + strandat 977.024 kb on + strand, within MIT1002_00885at 977.039 kb on - strand, within MIT1002_00885at 977.111 kb on + strand, within MIT1002_00885at 977.119 kb on - strand, within MIT1002_00885at 977.119 kb on - strand, within MIT1002_00885at 977.139 kb on - strand, within MIT1002_00885at 977.186 kb on - strand, within MIT1002_00885at 977.255 kb on - strand, within MIT1002_00885at 977.275 kb on + strand, within MIT1002_00885at 977.299 kb on - strand, within MIT1002_00885at 977.301 kb on + strand, within MIT1002_00885at 977.309 kb on - strand, within MIT1002_00885at 977.309 kb on - strand, within MIT1002_00885at 977.309 kb on - strand, within MIT1002_00885at 977.309 kb on - strand, within MIT1002_00885at 977.319 kb on + strand, within MIT1002_00885at 977.321 kb on + strand, within MIT1002_00885at 977.321 kb on + strand, within MIT1002_00885at 977.335 kb on + strand, within MIT1002_00885at 977.335 kb on + strand, within MIT1002_00885at 977.343 kb on - strand, within MIT1002_00885at 977.343 kb on - strand, within MIT1002_00885at 977.343 kb on - strand, within MIT1002_00885at 977.390 kb on - strand, within MIT1002_00885at 977.431 kb on + strandat 977.639 kb on - strand, within MIT1002_00886at 977.676 kb on - strand, within MIT1002_00886at 977.686 kb on - strand, within MIT1002_00886at 977.702 kb on + strand, within MIT1002_00886at 977.707 kb on + strand, within MIT1002_00886at 977.708 kb on + strand, within MIT1002_00886at 977.713 kb on + strand, within MIT1002_00886at 977.714 kb on - strand, within MIT1002_00886at 977.770 kb on + strand, within MIT1002_00886at 977.770 kb on + strand, within MIT1002_00886at 977.770 kb on + strand, within MIT1002_00886at 977.778 kb on - strand, within MIT1002_00886at 977.840 kb on - strand, within MIT1002_00886

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
remove
974,909 - MIT1002_00882 0.58 +2.9
974,949 + MIT1002_00882 0.66 +2.5
974,949 + MIT1002_00882 0.66 +0.4
974,952 - MIT1002_00882 0.66 +0.6
974,957 + MIT1002_00882 0.67 -2.4
974,957 - MIT1002_00882 0.67 +0.1
974,957 - MIT1002_00882 0.67 -0.8
974,957 - MIT1002_00882 0.67 +0.7
974,971 + MIT1002_00882 0.70 -0.3
974,971 + MIT1002_00882 0.70 -0.3
974,978 + MIT1002_00882 0.71 +0.4
975,087 + +0.2
975,097 + +0.8
975,150 + -2.6
975,300 + MIT1002_00883 0.23 -4.3
975,462 - MIT1002_00883 0.44 -1.1
975,574 + MIT1002_00883 0.59 -2.0
975,631 + MIT1002_00883 0.66 -2.5
975,655 - MIT1002_00883 0.69 -2.2
975,670 - MIT1002_00883 0.71 +0.0
975,782 + MIT1002_00883 0.86 -1.4
975,862 + +0.3
975,934 + -1.8
975,961 + -4.0
976,097 + MIT1002_00884 0.20 -3.3
976,194 + MIT1002_00884 0.31 -1.7
976,429 + MIT1002_00884 0.56 -2.1
976,479 + MIT1002_00884 0.61 -0.8
976,672 - MIT1002_00884 0.81 -1.1
976,867 + +1.5
976,968 + -1.0
976,999 + -0.4
976,999 + +1.2
977,024 + MIT1002_00885 0.15 +1.2
977,039 - MIT1002_00885 0.17 +0.7
977,111 + MIT1002_00885 0.31 +1.8
977,119 - MIT1002_00885 0.33 -0.2
977,119 - MIT1002_00885 0.33 +1.3
977,139 - MIT1002_00885 0.36 +2.0
977,186 - MIT1002_00885 0.45 -1.0
977,255 - MIT1002_00885 0.58 +0.4
977,275 + MIT1002_00885 0.62 -0.2
977,299 - MIT1002_00885 0.67 +1.9
977,301 + MIT1002_00885 0.67 -0.5
977,309 - MIT1002_00885 0.69 +0.4
977,309 - MIT1002_00885 0.69 -0.3
977,309 - MIT1002_00885 0.69 +0.3
977,309 - MIT1002_00885 0.69 -0.6
977,319 + MIT1002_00885 0.70 +1.0
977,321 + MIT1002_00885 0.71 +0.5
977,321 + MIT1002_00885 0.71 +0.0
977,335 + MIT1002_00885 0.73 -0.2
977,335 + MIT1002_00885 0.73 +0.7
977,343 - MIT1002_00885 0.75 -0.5
977,343 - MIT1002_00885 0.75 -2.0
977,343 - MIT1002_00885 0.75 -2.4
977,390 - MIT1002_00885 0.84 +0.5
977,431 + +0.1
977,639 - MIT1002_00886 0.17 +1.5
977,676 - MIT1002_00886 0.23 +0.5
977,686 - MIT1002_00886 0.24 -1.2
977,702 + MIT1002_00886 0.27 -1.3
977,707 + MIT1002_00886 0.28 +0.8
977,708 + MIT1002_00886 0.28 -0.2
977,713 + MIT1002_00886 0.28 +0.0
977,714 - MIT1002_00886 0.29 +0.4
977,770 + MIT1002_00886 0.37 +0.3
977,770 + MIT1002_00886 0.37 +0.3
977,770 + MIT1002_00886 0.37 -0.8
977,778 - MIT1002_00886 0.38 -1.3
977,840 - MIT1002_00886 0.47 -0.8

Or see this region's nucleotide sequence