Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00880

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00879 and MIT1002_00880 are separated by 134 nucleotidesMIT1002_00880 and MIT1002_00881 are separated by 86 nucleotides MIT1002_00879: MIT1002_00879 - Universal stress protein E, at 972,121 to 973,098 _00879 MIT1002_00880: MIT1002_00880 - hypothetical protein, at 973,233 to 973,346 _00880 MIT1002_00881: MIT1002_00881 - Morphology and auto-aggregation control protein, at 973,433 to 974,341 _00881 Position (kb) 973 974Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 972.248 kb on + strand, within MIT1002_00879at 972.346 kb on + strand, within MIT1002_00879at 972.354 kb on - strand, within MIT1002_00879at 972.456 kb on - strand, within MIT1002_00879at 972.470 kb on - strand, within MIT1002_00879at 972.515 kb on + strand, within MIT1002_00879at 972.515 kb on + strand, within MIT1002_00879at 972.517 kb on + strand, within MIT1002_00879at 972.523 kb on - strand, within MIT1002_00879at 972.523 kb on - strand, within MIT1002_00879at 972.530 kb on - strand, within MIT1002_00879at 972.597 kb on - strand, within MIT1002_00879at 972.627 kb on - strand, within MIT1002_00879at 972.664 kb on - strand, within MIT1002_00879at 972.722 kb on - strand, within MIT1002_00879at 972.722 kb on - strand, within MIT1002_00879at 972.745 kb on + strand, within MIT1002_00879at 972.745 kb on + strand, within MIT1002_00879at 972.750 kb on + strand, within MIT1002_00879at 972.819 kb on + strand, within MIT1002_00879at 972.840 kb on + strand, within MIT1002_00879at 972.848 kb on - strand, within MIT1002_00879at 972.894 kb on - strand, within MIT1002_00879at 972.894 kb on - strand, within MIT1002_00879at 973.023 kb on + strandat 973.025 kb on + strandat 973.033 kb on - strandat 973.060 kb on + strandat 973.068 kb on - strandat 973.136 kb on + strandat 973.441 kb on + strandat 973.448 kb on - strandat 973.448 kb on - strandat 973.500 kb on + strandat 973.500 kb on + strandat 973.513 kb on - strandat 973.518 kb on - strandat 973.545 kb on - strand, within MIT1002_00881at 973.547 kb on + strand, within MIT1002_00881at 973.595 kb on + strand, within MIT1002_00881at 973.595 kb on + strand, within MIT1002_00881at 973.595 kb on + strand, within MIT1002_00881at 973.664 kb on + strand, within MIT1002_00881at 973.683 kb on - strand, within MIT1002_00881at 973.697 kb on + strand, within MIT1002_00881at 973.716 kb on + strand, within MIT1002_00881at 973.868 kb on - strand, within MIT1002_00881at 973.868 kb on - strand, within MIT1002_00881at 973.910 kb on - strand, within MIT1002_00881at 973.918 kb on - strand, within MIT1002_00881at 973.928 kb on + strand, within MIT1002_00881at 973.931 kb on - strand, within MIT1002_00881at 973.936 kb on - strand, within MIT1002_00881at 973.961 kb on + strand, within MIT1002_00881at 973.972 kb on + strand, within MIT1002_00881at 973.972 kb on + strand, within MIT1002_00881at 974.035 kb on + strand, within MIT1002_00881at 974.035 kb on + strand, within MIT1002_00881at 974.035 kb on + strand, within MIT1002_00881at 974.035 kb on + strand, within MIT1002_00881at 974.037 kb on + strand, within MIT1002_00881at 974.043 kb on - strand, within MIT1002_00881at 974.043 kb on - strand, within MIT1002_00881at 974.043 kb on - strand, within MIT1002_00881at 974.043 kb on - strand, within MIT1002_00881at 974.069 kb on + strand, within MIT1002_00881at 974.075 kb on - strand, within MIT1002_00881at 974.118 kb on - strand, within MIT1002_00881at 974.194 kb on - strand, within MIT1002_00881at 974.212 kb on - strand, within MIT1002_00881at 974.232 kb on + strand, within MIT1002_00881at 974.255 kb on - strandat 974.264 kb on + strandat 974.314 kb on + strandat 974.315 kb on + strandat 974.342 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
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972,248 + MIT1002_00879 0.13 -1.7
972,346 + MIT1002_00879 0.23 -0.1
972,354 - MIT1002_00879 0.24 +0.1
972,456 - MIT1002_00879 0.34 +1.3
972,470 - MIT1002_00879 0.36 +1.7
972,515 + MIT1002_00879 0.40 -3.2
972,515 + MIT1002_00879 0.40 +0.4
972,517 + MIT1002_00879 0.40 +0.1
972,523 - MIT1002_00879 0.41 -1.0
972,523 - MIT1002_00879 0.41 -1.2
972,530 - MIT1002_00879 0.42 +0.4
972,597 - MIT1002_00879 0.49 -0.0
972,627 - MIT1002_00879 0.52 -0.3
972,664 - MIT1002_00879 0.56 +1.8
972,722 - MIT1002_00879 0.61 +1.3
972,722 - MIT1002_00879 0.61 -0.9
972,745 + MIT1002_00879 0.64 -0.7
972,745 + MIT1002_00879 0.64 +0.5
972,750 + MIT1002_00879 0.64 -0.1
972,819 + MIT1002_00879 0.71 -0.3
972,840 + MIT1002_00879 0.74 +1.0
972,848 - MIT1002_00879 0.74 -0.3
972,894 - MIT1002_00879 0.79 +0.2
972,894 - MIT1002_00879 0.79 -0.1
973,023 + +0.3
973,025 + -1.4
973,033 - +0.4
973,060 + -0.4
973,068 - -0.5
973,136 + +1.7
973,441 + -2.5
973,448 - -0.3
973,448 - -2.6
973,500 + -1.0
973,500 + +0.6
973,513 - -1.7
973,518 - -1.9
973,545 - MIT1002_00881 0.12 -0.0
973,547 + MIT1002_00881 0.13 -2.8
973,595 + MIT1002_00881 0.18 -2.1
973,595 + MIT1002_00881 0.18 -1.7
973,595 + MIT1002_00881 0.18 +0.8
973,664 + MIT1002_00881 0.25 -1.7
973,683 - MIT1002_00881 0.28 -1.1
973,697 + MIT1002_00881 0.29 -2.4
973,716 + MIT1002_00881 0.31 +0.0
973,868 - MIT1002_00881 0.48 -1.2
973,868 - MIT1002_00881 0.48 +0.0
973,910 - MIT1002_00881 0.52 -1.4
973,918 - MIT1002_00881 0.53 -0.0
973,928 + MIT1002_00881 0.54 -0.2
973,931 - MIT1002_00881 0.55 -0.5
973,936 - MIT1002_00881 0.55 -0.5
973,961 + MIT1002_00881 0.58 -0.9
973,972 + MIT1002_00881 0.59 -0.8
973,972 + MIT1002_00881 0.59 +0.4
974,035 + MIT1002_00881 0.66 -2.2
974,035 + MIT1002_00881 0.66 -1.9
974,035 + MIT1002_00881 0.66 +0.0
974,035 + MIT1002_00881 0.66 -0.7
974,037 + MIT1002_00881 0.66 -0.9
974,043 - MIT1002_00881 0.67 +1.0
974,043 - MIT1002_00881 0.67 -3.4
974,043 - MIT1002_00881 0.67 -0.8
974,043 - MIT1002_00881 0.67 -3.5
974,069 + MIT1002_00881 0.70 -0.6
974,075 - MIT1002_00881 0.71 -0.7
974,118 - MIT1002_00881 0.75 -0.9
974,194 - MIT1002_00881 0.84 -1.3
974,212 - MIT1002_00881 0.86 -1.6
974,232 + MIT1002_00881 0.88 -2.1
974,255 - -0.3
974,264 + -0.4
974,314 + -1.7
974,315 + +1.0
974,342 + +0.3

Or see this region's nucleotide sequence