Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00874

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00872 and MIT1002_00873 are separated by 187 nucleotidesMIT1002_00873 and MIT1002_00874 are separated by 209 nucleotidesMIT1002_00874 and MIT1002_00875 overlap by 8 nucleotides MIT1002_00872: MIT1002_00872 - Polyphosphate kinase, at 962,018 to 964,090 _00872 MIT1002_00873: MIT1002_00873 - formyltetrahydrofolate deformylase, at 964,278 to 964,784 _00873 MIT1002_00874: MIT1002_00874 - Phosphate transport system permease protein PstC, at 964,994 to 967,171 _00874 MIT1002_00875: MIT1002_00875 - Phosphate transport system permease protein PstA, at 967,164 to 968,723 _00875 Position (kb) 964 965 966 967 968Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 964.070 kb on + strandat 964.070 kb on + strandat 964.256 kb on - strandat 964.322 kb on + strandat 964.322 kb on + strandat 964.340 kb on - strand, within MIT1002_00873at 964.340 kb on - strand, within MIT1002_00873at 964.437 kb on + strand, within MIT1002_00873at 964.473 kb on + strand, within MIT1002_00873at 964.481 kb on - strand, within MIT1002_00873at 964.487 kb on - strand, within MIT1002_00873at 964.514 kb on - strand, within MIT1002_00873at 964.591 kb on - strand, within MIT1002_00873at 964.614 kb on - strand, within MIT1002_00873at 964.659 kb on + strand, within MIT1002_00873at 964.680 kb on + strand, within MIT1002_00873at 964.686 kb on - strand, within MIT1002_00873at 964.693 kb on - strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.717 kb on + strand, within MIT1002_00873at 964.725 kb on - strand, within MIT1002_00873at 964.744 kb on + strandat 964.757 kb on - strandat 964.772 kb on - strandat 964.792 kb on + strandat 964.844 kb on - strandat 964.858 kb on - strandat 964.894 kb on + strandat 964.910 kb on + strandat 964.918 kb on + strandat 964.920 kb on + strandat 964.920 kb on + strandat 964.926 kb on - strandat 964.926 kb on - strandat 964.926 kb on - strandat 965.005 kb on - strandat 965.060 kb on - strandat 965.126 kb on + strandat 965.137 kb on + strandat 965.145 kb on - strandat 965.145 kb on - strandat 965.186 kb on - strandat 965.223 kb on - strand, within MIT1002_00874at 965.269 kb on - strand, within MIT1002_00874at 965.332 kb on + strand, within MIT1002_00874at 965.433 kb on + strand, within MIT1002_00874at 965.473 kb on + strand, within MIT1002_00874at 965.481 kb on + strand, within MIT1002_00874at 965.497 kb on + strand, within MIT1002_00874at 965.497 kb on + strand, within MIT1002_00874at 965.497 kb on + strand, within MIT1002_00874at 965.497 kb on + strand, within MIT1002_00874at 965.497 kb on + strand, within MIT1002_00874at 965.530 kb on + strand, within MIT1002_00874at 965.532 kb on + strand, within MIT1002_00874at 965.537 kb on + strand, within MIT1002_00874at 965.540 kb on - strand, within MIT1002_00874at 965.540 kb on - strand, within MIT1002_00874at 965.570 kb on + strand, within MIT1002_00874at 965.570 kb on + strand, within MIT1002_00874at 965.598 kb on + strand, within MIT1002_00874at 965.613 kb on + strand, within MIT1002_00874at 965.613 kb on + strand, within MIT1002_00874at 965.621 kb on - strand, within MIT1002_00874at 965.692 kb on - strand, within MIT1002_00874at 965.764 kb on + strand, within MIT1002_00874at 965.818 kb on - strand, within MIT1002_00874at 965.845 kb on + strand, within MIT1002_00874at 965.890 kb on - strand, within MIT1002_00874at 965.962 kb on - strand, within MIT1002_00874at 965.980 kb on - strand, within MIT1002_00874at 966.105 kb on + strand, within MIT1002_00874at 966.122 kb on + strand, within MIT1002_00874at 966.138 kb on + strand, within MIT1002_00874at 966.155 kb on - strand, within MIT1002_00874at 966.242 kb on + strand, within MIT1002_00874at 966.281 kb on - strand, within MIT1002_00874at 966.281 kb on - strand, within MIT1002_00874at 966.283 kb on - strand, within MIT1002_00874at 966.306 kb on - strand, within MIT1002_00874at 966.550 kb on - strand, within MIT1002_00874at 966.573 kb on + strand, within MIT1002_00874at 966.573 kb on + strand, within MIT1002_00874at 966.578 kb on + strand, within MIT1002_00874at 966.603 kb on - strand, within MIT1002_00874at 966.718 kb on + strand, within MIT1002_00874at 966.718 kb on - strand, within MIT1002_00874at 966.738 kb on + strand, within MIT1002_00874at 966.746 kb on - strand, within MIT1002_00874at 966.842 kb on + strand, within MIT1002_00874at 966.878 kb on + strand, within MIT1002_00874at 966.891 kb on - strand, within MIT1002_00874at 966.919 kb on - strand, within MIT1002_00874at 966.945 kb on + strand, within MIT1002_00874at 967.117 kb on + strandat 967.141 kb on + strandat 967.141 kb on + strandat 967.192 kb on + strandat 967.192 kb on + strandat 967.192 kb on + strandat 967.197 kb on + strandat 967.349 kb on - strand, within MIT1002_00875at 967.359 kb on - strand, within MIT1002_00875at 967.430 kb on + strand, within MIT1002_00875at 967.434 kb on + strand, within MIT1002_00875at 967.533 kb on - strand, within MIT1002_00875at 967.561 kb on + strand, within MIT1002_00875at 967.579 kb on - strand, within MIT1002_00875at 967.589 kb on + strand, within MIT1002_00875at 967.604 kb on + strand, within MIT1002_00875at 967.638 kb on + strand, within MIT1002_00875at 967.663 kb on - strand, within MIT1002_00875at 967.791 kb on + strand, within MIT1002_00875at 967.791 kb on + strand, within MIT1002_00875at 967.939 kb on + strand, within MIT1002_00875at 967.978 kb on - strand, within MIT1002_00875at 967.982 kb on + strand, within MIT1002_00875at 967.987 kb on + strand, within MIT1002_00875at 967.995 kb on - strand, within MIT1002_00875at 967.997 kb on - strand, within MIT1002_00875at 968.012 kb on + strand, within MIT1002_00875at 968.069 kb on + strand, within MIT1002_00875at 968.087 kb on - strand, within MIT1002_00875at 968.104 kb on + strand, within MIT1002_00875at 968.128 kb on + strand, within MIT1002_00875

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
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964,070 + -0.3
964,070 + -1.7
964,256 - +0.3
964,322 + -0.7
964,322 + -0.3
964,340 - MIT1002_00873 0.12 -1.0
964,340 - MIT1002_00873 0.12 -0.1
964,437 + MIT1002_00873 0.31 +0.7
964,473 + MIT1002_00873 0.38 -0.2
964,481 - MIT1002_00873 0.40 +1.8
964,487 - MIT1002_00873 0.41 +0.2
964,514 - MIT1002_00873 0.47 +0.7
964,591 - MIT1002_00873 0.62 +0.0
964,614 - MIT1002_00873 0.66 +1.2
964,659 + MIT1002_00873 0.75 -0.7
964,680 + MIT1002_00873 0.79 -1.1
964,686 - MIT1002_00873 0.80 -0.3
964,693 - MIT1002_00873 0.82 +0.6
964,717 + MIT1002_00873 0.87 -2.6
964,717 + MIT1002_00873 0.87 -2.0
964,717 + MIT1002_00873 0.87 +0.1
964,717 + MIT1002_00873 0.87 +0.8
964,725 - MIT1002_00873 0.88 +0.4
964,744 + -0.7
964,757 - -2.7
964,772 - -1.4
964,792 + -1.5
964,844 - +0.9
964,858 - +0.8
964,894 + +1.9
964,910 + -0.9
964,918 + -0.3
964,920 + +1.0
964,920 + +0.5
964,926 - -0.9
964,926 - -1.5
964,926 - -0.3
965,005 - -2.2
965,060 - -2.1
965,126 + -1.9
965,137 + -1.1
965,145 - -1.0
965,145 - -2.5
965,186 - -1.0
965,223 - MIT1002_00874 0.11 -1.1
965,269 - MIT1002_00874 0.13 -2.0
965,332 + MIT1002_00874 0.16 -2.3
965,433 + MIT1002_00874 0.20 +0.0
965,473 + MIT1002_00874 0.22 -1.7
965,481 + MIT1002_00874 0.22 -1.5
965,497 + MIT1002_00874 0.23 -2.4
965,497 + MIT1002_00874 0.23 -1.1
965,497 + MIT1002_00874 0.23 -2.3
965,497 + MIT1002_00874 0.23 -1.4
965,497 + MIT1002_00874 0.23 -0.8
965,530 + MIT1002_00874 0.25 -0.8
965,532 + MIT1002_00874 0.25 -2.5
965,537 + MIT1002_00874 0.25 -1.1
965,540 - MIT1002_00874 0.25 -0.1
965,540 - MIT1002_00874 0.25 -1.7
965,570 + MIT1002_00874 0.26 -1.8
965,570 + MIT1002_00874 0.26 -0.9
965,598 + MIT1002_00874 0.28 -1.1
965,613 + MIT1002_00874 0.28 +0.4
965,613 + MIT1002_00874 0.28 -0.3
965,621 - MIT1002_00874 0.29 -3.0
965,692 - MIT1002_00874 0.32 -2.0
965,764 + MIT1002_00874 0.35 -1.0
965,818 - MIT1002_00874 0.38 -2.3
965,845 + MIT1002_00874 0.39 +0.9
965,890 - MIT1002_00874 0.41 -3.6
965,962 - MIT1002_00874 0.44 -0.2
965,980 - MIT1002_00874 0.45 -0.9
966,105 + MIT1002_00874 0.51 -1.1
966,122 + MIT1002_00874 0.52 -1.3
966,138 + MIT1002_00874 0.53 -0.5
966,155 - MIT1002_00874 0.53 -2.3
966,242 + MIT1002_00874 0.57 -2.1
966,281 - MIT1002_00874 0.59 -0.5
966,281 - MIT1002_00874 0.59 -1.9
966,283 - MIT1002_00874 0.59 -0.6
966,306 - MIT1002_00874 0.60 -0.7
966,550 - MIT1002_00874 0.71 -3.6
966,573 + MIT1002_00874 0.72 -2.7
966,573 + MIT1002_00874 0.72 +0.5
966,578 + MIT1002_00874 0.73 -2.0
966,603 - MIT1002_00874 0.74 -1.1
966,718 + MIT1002_00874 0.79 +1.4
966,718 - MIT1002_00874 0.79 -1.4
966,738 + MIT1002_00874 0.80 -2.3
966,746 - MIT1002_00874 0.80 -2.5
966,842 + MIT1002_00874 0.85 -1.2
966,878 + MIT1002_00874 0.87 -2.6
966,891 - MIT1002_00874 0.87 -2.5
966,919 - MIT1002_00874 0.88 -1.4
966,945 + MIT1002_00874 0.90 -0.5
967,117 + +1.5
967,141 + +0.2
967,141 + -0.7
967,192 + -2.1
967,192 + -1.8
967,192 + -2.3
967,197 + -1.1
967,349 - MIT1002_00875 0.12 -1.5
967,359 - MIT1002_00875 0.12 -1.6
967,430 + MIT1002_00875 0.17 -2.5
967,434 + MIT1002_00875 0.17 -0.5
967,533 - MIT1002_00875 0.24 -1.1
967,561 + MIT1002_00875 0.25 -1.4
967,579 - MIT1002_00875 0.27 +0.5
967,589 + MIT1002_00875 0.27 -1.8
967,604 + MIT1002_00875 0.28 -2.6
967,638 + MIT1002_00875 0.30 -2.2
967,663 - MIT1002_00875 0.32 -3.3
967,791 + MIT1002_00875 0.40 -2.4
967,791 + MIT1002_00875 0.40 -1.0
967,939 + MIT1002_00875 0.50 -2.5
967,978 - MIT1002_00875 0.52 -1.0
967,982 + MIT1002_00875 0.52 +1.9
967,987 + MIT1002_00875 0.53 +0.1
967,995 - MIT1002_00875 0.53 -1.9
967,997 - MIT1002_00875 0.53 +0.5
968,012 + MIT1002_00875 0.54 -1.7
968,069 + MIT1002_00875 0.58 -0.8
968,087 - MIT1002_00875 0.59 -2.4
968,104 + MIT1002_00875 0.60 -1.3
968,128 + MIT1002_00875 0.62 -1.9

Or see this region's nucleotide sequence