Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00824

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00822 and MIT1002_00823 are separated by 174 nucleotidesMIT1002_00823 and MIT1002_00824 overlap by 1 nucleotidesMIT1002_00824 and MIT1002_00825 are separated by 84 nucleotidesMIT1002_00825 and MIT1002_00826 are separated by 13 nucleotidesMIT1002_00826 and MIT1002_00827 are separated by 30 nucleotides MIT1002_00822: MIT1002_00822 - Magnesium transporter MgtE, at 906,255 to 907,613 _00822 MIT1002_00823: MIT1002_00823 - Phosphocarrier protein NPr, at 907,788 to 908,060 _00823 MIT1002_00824: MIT1002_00824 - glmZ(sRNA)-inactivating NTPase, at 908,060 to 908,905 _00824 MIT1002_00825: MIT1002_00825 - Nitrogen regulatory protein, at 908,990 to 909,433 _00825 MIT1002_00826: MIT1002_00826 - Ribosome hibernation promoting factor, at 909,447 to 909,734 _00826 MIT1002_00827: MIT1002_00827 - RNA polymerase sigma-54 factor 2, at 909,765 to 911,246 _00827 Position (kb) 908 909Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 907.107 kb on - strand, within MIT1002_00822at 907.114 kb on + strand, within MIT1002_00822at 907.131 kb on + strand, within MIT1002_00822at 907.139 kb on - strand, within MIT1002_00822at 907.142 kb on + strand, within MIT1002_00822at 907.149 kb on + strand, within MIT1002_00822at 907.149 kb on + strand, within MIT1002_00822at 907.162 kb on - strand, within MIT1002_00822at 907.210 kb on + strand, within MIT1002_00822at 907.210 kb on + strand, within MIT1002_00822at 907.210 kb on + strand, within MIT1002_00822at 907.210 kb on + strand, within MIT1002_00822at 907.210 kb on + strand, within MIT1002_00822at 907.218 kb on - strand, within MIT1002_00822at 907.218 kb on - strand, within MIT1002_00822at 907.321 kb on + strand, within MIT1002_00822at 907.337 kb on - strand, within MIT1002_00822at 907.337 kb on - strand, within MIT1002_00822at 907.466 kb on - strand, within MIT1002_00822at 907.469 kb on + strand, within MIT1002_00822at 907.548 kb on + strandat 907.556 kb on - strandat 907.556 kb on - strandat 907.558 kb on + strandat 907.587 kb on - strandat 907.661 kb on + strandat 907.669 kb on - strandat 907.822 kb on - strand, within MIT1002_00823at 907.858 kb on - strand, within MIT1002_00823at 907.868 kb on - strand, within MIT1002_00823at 907.878 kb on + strand, within MIT1002_00823at 907.893 kb on + strand, within MIT1002_00823at 907.919 kb on - strand, within MIT1002_00823at 907.992 kb on - strand, within MIT1002_00823at 908.028 kb on + strand, within MIT1002_00823at 908.115 kb on + strandat 908.123 kb on - strandat 908.134 kb on - strandat 908.150 kb on + strand, within MIT1002_00824at 908.150 kb on + strand, within MIT1002_00824at 908.158 kb on - strand, within MIT1002_00824at 908.158 kb on - strand, within MIT1002_00824at 908.158 kb on - strand, within MIT1002_00824at 908.163 kb on + strand, within MIT1002_00824at 908.166 kb on - strand, within MIT1002_00824at 908.212 kb on - strand, within MIT1002_00824at 908.218 kb on + strand, within MIT1002_00824at 908.266 kb on - strand, within MIT1002_00824at 908.268 kb on + strand, within MIT1002_00824at 908.277 kb on + strand, within MIT1002_00824at 908.301 kb on + strand, within MIT1002_00824at 908.449 kb on + strand, within MIT1002_00824at 908.457 kb on - strand, within MIT1002_00824at 908.474 kb on - strand, within MIT1002_00824at 908.499 kb on - strand, within MIT1002_00824at 908.507 kb on + strand, within MIT1002_00824at 908.507 kb on + strand, within MIT1002_00824at 908.507 kb on + strand, within MIT1002_00824at 908.515 kb on - strand, within MIT1002_00824at 908.596 kb on + strand, within MIT1002_00824at 908.604 kb on - strand, within MIT1002_00824at 908.630 kb on - strand, within MIT1002_00824at 908.630 kb on - strand, within MIT1002_00824at 908.735 kb on + strand, within MIT1002_00824at 908.745 kb on - strand, within MIT1002_00824at 908.745 kb on - strand, within MIT1002_00824at 908.775 kb on + strand, within MIT1002_00824at 908.776 kb on + strand, within MIT1002_00824at 908.776 kb on - strand, within MIT1002_00824at 908.907 kb on - strandat 908.941 kb on + strandat 908.979 kb on - strandat 909.099 kb on + strand, within MIT1002_00825at 909.104 kb on + strand, within MIT1002_00825at 909.104 kb on + strand, within MIT1002_00825at 909.188 kb on + strand, within MIT1002_00825at 909.196 kb on - strand, within MIT1002_00825at 909.196 kb on - strand, within MIT1002_00825at 909.196 kb on - strand, within MIT1002_00825at 909.262 kb on - strand, within MIT1002_00825at 909.277 kb on - strand, within MIT1002_00825at 909.311 kb on - strand, within MIT1002_00825at 909.411 kb on - strandat 909.417 kb on - strandat 909.515 kb on - strand, within MIT1002_00826at 909.528 kb on - strand, within MIT1002_00826at 909.562 kb on - strand, within MIT1002_00826at 909.572 kb on - strand, within MIT1002_00826at 909.708 kb on + strandat 909.842 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
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907,107 - MIT1002_00822 0.63 -1.6
907,114 + MIT1002_00822 0.63 -0.3
907,131 + MIT1002_00822 0.64 +1.7
907,139 - MIT1002_00822 0.65 -2.7
907,142 + MIT1002_00822 0.65 +1.1
907,149 + MIT1002_00822 0.66 +0.0
907,149 + MIT1002_00822 0.66 -0.9
907,162 - MIT1002_00822 0.67 +1.5
907,210 + MIT1002_00822 0.70 +0.9
907,210 + MIT1002_00822 0.70 +2.6
907,210 + MIT1002_00822 0.70 +0.0
907,210 + MIT1002_00822 0.70 -0.2
907,210 + MIT1002_00822 0.70 -1.1
907,218 - MIT1002_00822 0.71 +2.5
907,218 - MIT1002_00822 0.71 +0.0
907,321 + MIT1002_00822 0.78 +0.3
907,337 - MIT1002_00822 0.80 +0.0
907,337 - MIT1002_00822 0.80 -0.6
907,466 - MIT1002_00822 0.89 +0.4
907,469 + MIT1002_00822 0.89 -0.4
907,548 + -1.8
907,556 - -0.1
907,556 - +1.6
907,558 + -0.8
907,587 - +1.2
907,661 + -0.1
907,669 - -1.7
907,822 - MIT1002_00823 0.12 -0.7
907,858 - MIT1002_00823 0.26 -1.4
907,868 - MIT1002_00823 0.29 -0.6
907,878 + MIT1002_00823 0.33 -3.3
907,893 + MIT1002_00823 0.38 -2.1
907,919 - MIT1002_00823 0.48 -2.2
907,992 - MIT1002_00823 0.75 -3.1
908,028 + MIT1002_00823 0.88 -0.3
908,115 + +0.0
908,123 - +1.4
908,134 - +1.0
908,150 + MIT1002_00824 0.11 -0.4
908,150 + MIT1002_00824 0.11 +0.7
908,158 - MIT1002_00824 0.12 +0.4
908,158 - MIT1002_00824 0.12 -0.4
908,158 - MIT1002_00824 0.12 +0.2
908,163 + MIT1002_00824 0.12 -0.5
908,166 - MIT1002_00824 0.13 -0.4
908,212 - MIT1002_00824 0.18 -0.2
908,218 + MIT1002_00824 0.19 -0.6
908,266 - MIT1002_00824 0.24 -0.2
908,268 + MIT1002_00824 0.25 -0.1
908,277 + MIT1002_00824 0.26 +0.4
908,301 + MIT1002_00824 0.28 -0.4
908,449 + MIT1002_00824 0.46 -2.5
908,457 - MIT1002_00824 0.47 -0.2
908,474 - MIT1002_00824 0.49 +0.7
908,499 - MIT1002_00824 0.52 -0.8
908,507 + MIT1002_00824 0.53 -1.2
908,507 + MIT1002_00824 0.53 +0.5
908,507 + MIT1002_00824 0.53 -2.1
908,515 - MIT1002_00824 0.54 +0.2
908,596 + MIT1002_00824 0.63 -1.0
908,604 - MIT1002_00824 0.64 +0.3
908,630 - MIT1002_00824 0.67 +1.0
908,630 - MIT1002_00824 0.67 -1.2
908,735 + MIT1002_00824 0.80 -0.2
908,745 - MIT1002_00824 0.81 +0.4
908,745 - MIT1002_00824 0.81 -0.6
908,775 + MIT1002_00824 0.85 -0.9
908,776 + MIT1002_00824 0.85 -0.6
908,776 - MIT1002_00824 0.85 +0.2
908,907 - +1.1
908,941 + -1.0
908,979 - +0.8
909,099 + MIT1002_00825 0.25 -2.3
909,104 + MIT1002_00825 0.26 +0.6
909,104 + MIT1002_00825 0.26 -1.0
909,188 + MIT1002_00825 0.45 -2.0
909,196 - MIT1002_00825 0.46 -1.4
909,196 - MIT1002_00825 0.46 +0.0
909,196 - MIT1002_00825 0.46 -1.9
909,262 - MIT1002_00825 0.61 +0.5
909,277 - MIT1002_00825 0.65 -3.0
909,311 - MIT1002_00825 0.72 -2.5
909,411 - -3.0
909,417 - -2.0
909,515 - MIT1002_00826 0.24 -5.4
909,528 - MIT1002_00826 0.28 -3.0
909,562 - MIT1002_00826 0.40 -3.8
909,572 - MIT1002_00826 0.43 -2.7
909,708 + -4.1
909,842 + -1.0

Or see this region's nucleotide sequence