Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00814 and MIT1002_00815 are separated by 1 nucleotides MIT1002_00815 and MIT1002_00816 overlap by 4 nucleotides MIT1002_00816 and MIT1002_00817 are separated by 168 nucleotides
MIT1002_00814: MIT1002_00814 - Ubiquinol-cytochrome c reductase iron-sulfur subunit, at 899,465 to 900,097
_00814
MIT1002_00815: MIT1002_00815 - Cytochrome b/c1, at 900,099 to 901,364
_00815
MIT1002_00816: MIT1002_00816 - Cytochrome c1 precursor, at 901,361 to 902,095
_00816
MIT1002_00817: MIT1002_00817 - Stringent starvation protein A, at 902,264 to 902,896
_00817
Position (kb) 900
901
902 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 899.115 kb on - strand at 899.134 kb on - strand at 899.153 kb on + strand at 899.153 kb on + strand at 899.207 kb on + strand at 899.232 kb on - strand at 899.344 kb on - strand at 899.388 kb on - strand at 899.403 kb on - strand at 899.415 kb on + strand at 899.425 kb on + strand at 899.484 kb on + strand at 899.539 kb on + strand, within MIT1002_00814 at 899.662 kb on - strand, within MIT1002_00814 at 899.684 kb on - strand, within MIT1002_00814 at 899.715 kb on - strand, within MIT1002_00814 at 899.773 kb on - strand, within MIT1002_00814 at 899.791 kb on + strand, within MIT1002_00814 at 899.872 kb on - strand, within MIT1002_00814 at 899.879 kb on + strand, within MIT1002_00814 at 899.887 kb on - strand, within MIT1002_00814 at 899.889 kb on + strand, within MIT1002_00814 at 899.892 kb on + strand, within MIT1002_00814 at 899.986 kb on + strand, within MIT1002_00814 at 900.075 kb on + strand at 900.083 kb on - strand at 900.134 kb on - strand at 900.139 kb on - strand at 900.523 kb on - strand, within MIT1002_00815 at 900.932 kb on - strand, within MIT1002_00815 at 901.121 kb on + strand, within MIT1002_00815 at 901.121 kb on + strand, within MIT1002_00815 at 901.121 kb on + strand, within MIT1002_00815 at 901.121 kb on + strand, within MIT1002_00815 at 901.129 kb on - strand, within MIT1002_00815 at 901.129 kb on - strand, within MIT1002_00815 at 901.131 kb on + strand, within MIT1002_00815 at 901.175 kb on - strand, within MIT1002_00815 at 901.490 kb on - strand, within MIT1002_00816 at 901.490 kb on - strand, within MIT1002_00816 at 901.490 kb on - strand, within MIT1002_00816 at 901.501 kb on + strand, within MIT1002_00816 at 901.556 kb on + strand, within MIT1002_00816 at 901.597 kb on - strand, within MIT1002_00816 at 901.668 kb on + strand, within MIT1002_00816 at 901.764 kb on + strand, within MIT1002_00816 at 901.782 kb on - strand, within MIT1002_00816 at 901.853 kb on - strand, within MIT1002_00816 at 902.044 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 899,115 - -1.0 899,134 - +1.6 899,153 + +0.0 899,153 + +0.2 899,207 + -0.6 899,232 - +1.1 899,344 - -1.3 899,388 - -3.1 899,403 - -1.0 899,415 + -1.3 899,425 + -2.0 899,484 + -1.0 899,539 + MIT1002_00814 0.12 -1.0 899,662 - MIT1002_00814 0.31 -2.7 899,684 - MIT1002_00814 0.35 -1.7 899,715 - MIT1002_00814 0.39 -1.6 899,773 - MIT1002_00814 0.49 -1.0 899,791 + MIT1002_00814 0.52 -3.5 899,872 - MIT1002_00814 0.64 -0.8 899,879 + MIT1002_00814 0.65 -0.8 899,887 - MIT1002_00814 0.67 -2.7 899,889 + MIT1002_00814 0.67 -0.3 899,892 + MIT1002_00814 0.67 -1.3 899,986 + MIT1002_00814 0.82 -1.8 900,075 + -0.8 900,083 - -0.3 900,134 - -1.0 900,139 - -2.3 900,523 - MIT1002_00815 0.33 -1.1 900,932 - MIT1002_00815 0.66 -2.3 901,121 + MIT1002_00815 0.81 -2.1 901,121 + MIT1002_00815 0.81 +0.0 901,121 + MIT1002_00815 0.81 -1.4 901,121 + MIT1002_00815 0.81 -1.1 901,129 - MIT1002_00815 0.81 -1.0 901,129 - MIT1002_00815 0.81 -1.8 901,131 + MIT1002_00815 0.82 -2.4 901,175 - MIT1002_00815 0.85 -1.3 901,490 - MIT1002_00816 0.18 -1.7 901,490 - MIT1002_00816 0.18 -1.4 901,490 - MIT1002_00816 0.18 -2.0 901,501 + MIT1002_00816 0.19 -0.8 901,556 + MIT1002_00816 0.27 -1.0 901,597 - MIT1002_00816 0.32 -1.0 901,668 + MIT1002_00816 0.42 -2.1 901,764 + MIT1002_00816 0.55 -2.1 901,782 - MIT1002_00816 0.57 -1.1 901,853 - MIT1002_00816 0.67 -0.8 902,044 - -3.0
Or see this region's nucleotide sequence