Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00766

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00765 and MIT1002_00766 are separated by 112 nucleotidesMIT1002_00766 and MIT1002_00767 are separated by 117 nucleotides MIT1002_00765: MIT1002_00765 - Long-chain-fatty-acid--CoA ligase, at 842,414 to 843,982 _00765 MIT1002_00766: MIT1002_00766 - hypothetical protein, at 844,095 to 844,568 _00766 MIT1002_00767: MIT1002_00767 - Soluble aldose sugar dehydrogenase YliI precursor, at 844,686 to 845,912 _00767 Position (kb) 844 845Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 843.147 kb on + strand, within MIT1002_00765at 843.147 kb on + strand, within MIT1002_00765at 843.155 kb on - strand, within MIT1002_00765at 843.155 kb on - strand, within MIT1002_00765at 843.155 kb on - strand, within MIT1002_00765at 843.263 kb on + strand, within MIT1002_00765at 843.340 kb on + strand, within MIT1002_00765at 843.389 kb on + strand, within MIT1002_00765at 843.389 kb on + strand, within MIT1002_00765at 843.397 kb on - strand, within MIT1002_00765at 843.412 kb on + strand, within MIT1002_00765at 843.412 kb on + strand, within MIT1002_00765at 843.414 kb on - strand, within MIT1002_00765at 843.423 kb on - strand, within MIT1002_00765at 843.462 kb on + strand, within MIT1002_00765at 843.462 kb on + strand, within MIT1002_00765at 843.487 kb on + strand, within MIT1002_00765at 843.487 kb on + strand, within MIT1002_00765at 843.495 kb on - strand, within MIT1002_00765at 843.495 kb on - strand, within MIT1002_00765at 843.497 kb on - strand, within MIT1002_00765at 843.497 kb on - strand, within MIT1002_00765at 843.499 kb on - strand, within MIT1002_00765at 843.502 kb on - strand, within MIT1002_00765at 843.502 kb on - strand, within MIT1002_00765at 843.546 kb on + strand, within MIT1002_00765at 843.546 kb on + strand, within MIT1002_00765at 843.546 kb on + strand, within MIT1002_00765at 843.554 kb on - strand, within MIT1002_00765at 843.567 kb on + strand, within MIT1002_00765at 843.733 kb on - strand, within MIT1002_00765at 843.737 kb on + strand, within MIT1002_00765at 843.737 kb on + strand, within MIT1002_00765at 843.742 kb on + strand, within MIT1002_00765at 843.755 kb on - strand, within MIT1002_00765at 843.764 kb on - strand, within MIT1002_00765at 843.804 kb on - strand, within MIT1002_00765at 843.839 kb on + strandat 843.839 kb on + strandat 843.847 kb on - strandat 843.847 kb on - strandat 843.852 kb on - strandat 843.998 kb on - strandat 844.144 kb on - strand, within MIT1002_00766at 844.149 kb on - strand, within MIT1002_00766at 844.161 kb on - strand, within MIT1002_00766at 844.172 kb on + strand, within MIT1002_00766at 844.180 kb on - strand, within MIT1002_00766at 844.181 kb on - strand, within MIT1002_00766at 844.183 kb on + strand, within MIT1002_00766at 844.406 kb on - strand, within MIT1002_00766at 844.546 kb on - strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.553 kb on + strandat 844.561 kb on - strandat 844.595 kb on + strandat 844.603 kb on - strandat 844.628 kb on - strandat 844.637 kb on - strandat 844.646 kb on + strandat 844.779 kb on - strandat 844.779 kb on - strandat 844.796 kb on + strandat 844.804 kb on - strandat 844.833 kb on - strand, within MIT1002_00767at 844.862 kb on + strand, within MIT1002_00767at 844.904 kb on + strand, within MIT1002_00767at 844.929 kb on + strand, within MIT1002_00767at 844.937 kb on - strand, within MIT1002_00767at 844.942 kb on + strand, within MIT1002_00767at 844.950 kb on - strand, within MIT1002_00767at 844.950 kb on - strand, within MIT1002_00767at 844.950 kb on - strand, within MIT1002_00767at 845.002 kb on - strand, within MIT1002_00767at 845.030 kb on + strand, within MIT1002_00767at 845.038 kb on - strand, within MIT1002_00767at 845.038 kb on - strand, within MIT1002_00767at 845.043 kb on + strand, within MIT1002_00767at 845.043 kb on + strand, within MIT1002_00767at 845.051 kb on - strand, within MIT1002_00767at 845.075 kb on - strand, within MIT1002_00767at 845.098 kb on - strand, within MIT1002_00767at 845.108 kb on - strand, within MIT1002_00767at 845.121 kb on - strand, within MIT1002_00767at 845.207 kb on - strand, within MIT1002_00767at 845.210 kb on + strand, within MIT1002_00767at 845.229 kb on + strand, within MIT1002_00767at 845.229 kb on + strand, within MIT1002_00767at 845.272 kb on - strand, within MIT1002_00767at 845.322 kb on - strand, within MIT1002_00767at 845.372 kb on - strand, within MIT1002_00767at 845.391 kb on + strand, within MIT1002_00767at 845.434 kb on + strand, within MIT1002_00767at 845.451 kb on + strand, within MIT1002_00767at 845.451 kb on + strand, within MIT1002_00767at 845.452 kb on - strand, within MIT1002_00767at 845.459 kb on - strand, within MIT1002_00767at 845.459 kb on - strand, within MIT1002_00767at 845.503 kb on + strand, within MIT1002_00767at 845.511 kb on - strand, within MIT1002_00767at 845.562 kb on + strand, within MIT1002_00767

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
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843,147 + MIT1002_00765 0.47 +1.9
843,147 + MIT1002_00765 0.47 -0.5
843,155 - MIT1002_00765 0.47 +0.7
843,155 - MIT1002_00765 0.47 +0.3
843,155 - MIT1002_00765 0.47 -0.7
843,263 + MIT1002_00765 0.54 +0.9
843,340 + MIT1002_00765 0.59 +0.4
843,389 + MIT1002_00765 0.62 +2.0
843,389 + MIT1002_00765 0.62 -0.3
843,397 - MIT1002_00765 0.63 +0.5
843,412 + MIT1002_00765 0.64 -1.7
843,412 + MIT1002_00765 0.64 +0.6
843,414 - MIT1002_00765 0.64 +0.2
843,423 - MIT1002_00765 0.64 +0.5
843,462 + MIT1002_00765 0.67 -0.7
843,462 + MIT1002_00765 0.67 -0.2
843,487 + MIT1002_00765 0.68 -0.3
843,487 + MIT1002_00765 0.68 -1.2
843,495 - MIT1002_00765 0.69 +1.0
843,495 - MIT1002_00765 0.69 -0.4
843,497 - MIT1002_00765 0.69 +0.5
843,497 - MIT1002_00765 0.69 +0.0
843,499 - MIT1002_00765 0.69 -0.7
843,502 - MIT1002_00765 0.69 +0.3
843,502 - MIT1002_00765 0.69 -0.6
843,546 + MIT1002_00765 0.72 +0.0
843,546 + MIT1002_00765 0.72 +0.4
843,546 + MIT1002_00765 0.72 +0.9
843,554 - MIT1002_00765 0.73 +1.7
843,567 + MIT1002_00765 0.73 +0.8
843,733 - MIT1002_00765 0.84 +0.4
843,737 + MIT1002_00765 0.84 -1.1
843,737 + MIT1002_00765 0.84 +0.3
843,742 + MIT1002_00765 0.85 -0.5
843,755 - MIT1002_00765 0.85 +0.3
843,764 - MIT1002_00765 0.86 -2.9
843,804 - MIT1002_00765 0.89 +0.5
843,839 + +0.5
843,839 + -0.3
843,847 - -0.2
843,847 - +2.0
843,852 - +0.6
843,998 - +1.1
844,144 - MIT1002_00766 0.10 -0.4
844,149 - MIT1002_00766 0.11 +2.1
844,161 - MIT1002_00766 0.14 +1.5
844,172 + MIT1002_00766 0.16 -0.1
844,180 - MIT1002_00766 0.18 +0.3
844,181 - MIT1002_00766 0.18 +0.6
844,183 + MIT1002_00766 0.19 -0.1
844,406 - MIT1002_00766 0.66 -0.0
844,546 - +0.0
844,553 + -2.1
844,553 + +0.9
844,553 + -4.2
844,553 + +0.5
844,553 + -0.9
844,553 + +0.6
844,553 + +0.0
844,553 + -2.7
844,561 - +0.1
844,595 + +1.8
844,603 - -0.1
844,628 - +0.7
844,637 - +1.1
844,646 + +0.6
844,779 - +0.4
844,779 - -0.6
844,796 + -1.2
844,804 - +0.5
844,833 - MIT1002_00767 0.12 -0.5
844,862 + MIT1002_00767 0.14 +0.3
844,904 + MIT1002_00767 0.18 +0.1
844,929 + MIT1002_00767 0.20 -0.1
844,937 - MIT1002_00767 0.20 +0.5
844,942 + MIT1002_00767 0.21 -0.4
844,950 - MIT1002_00767 0.22 -1.0
844,950 - MIT1002_00767 0.22 -1.2
844,950 - MIT1002_00767 0.22 -0.7
845,002 - MIT1002_00767 0.26 +0.5
845,030 + MIT1002_00767 0.28 +0.6
845,038 - MIT1002_00767 0.29 +0.2
845,038 - MIT1002_00767 0.29 -0.3
845,043 + MIT1002_00767 0.29 -1.9
845,043 + MIT1002_00767 0.29 -1.7
845,051 - MIT1002_00767 0.30 -0.0
845,075 - MIT1002_00767 0.32 +0.2
845,098 - MIT1002_00767 0.34 +1.2
845,108 - MIT1002_00767 0.34 -1.1
845,121 - MIT1002_00767 0.35 +0.4
845,207 - MIT1002_00767 0.42 -0.1
845,210 + MIT1002_00767 0.43 +0.2
845,229 + MIT1002_00767 0.44 +1.0
845,229 + MIT1002_00767 0.44 +2.5
845,272 - MIT1002_00767 0.48 +0.0
845,322 - MIT1002_00767 0.52 +0.9
845,372 - MIT1002_00767 0.56 +0.7
845,391 + MIT1002_00767 0.57 +0.8
845,434 + MIT1002_00767 0.61 +0.1
845,451 + MIT1002_00767 0.62 +0.0
845,451 + MIT1002_00767 0.62 +1.4
845,452 - MIT1002_00767 0.62 +0.7
845,459 - MIT1002_00767 0.63 -0.1
845,459 - MIT1002_00767 0.63 +0.3
845,503 + MIT1002_00767 0.67 +1.0
845,511 - MIT1002_00767 0.67 +3.1
845,562 + MIT1002_00767 0.71 -2.5

Or see this region's nucleotide sequence