Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00718 and MIT1002_00719 overlap by 4 nucleotides MIT1002_00719 and MIT1002_00720 are separated by 479 nucleotides MIT1002_00720 and MIT1002_00721 are separated by 122 nucleotides
MIT1002_00718: MIT1002_00718 - serine/threonine protein kinase, at 785,370 to 786,353
_00718
MIT1002_00719: MIT1002_00719 - cytochrome c oxidase accessory protein CcoG, at 786,350 to 787,780
_00719
MIT1002_00720: MIT1002_00720 - hypothetical protein, at 788,260 to 788,631
_00720
MIT1002_00721: MIT1002_00721 - hypothetical protein, at 788,754 to 789,299
_00721
Position (kb) 786
787
788 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 785.394 kb on + strand at 785.394 kb on + strand at 785.402 kb on - strand at 785.409 kb on + strand at 785.451 kb on + strand at 785.471 kb on - strand, within MIT1002_00718 at 785.500 kb on - strand, within MIT1002_00718 at 785.526 kb on - strand, within MIT1002_00718 at 785.538 kb on - strand, within MIT1002_00718 at 785.548 kb on + strand, within MIT1002_00718 at 785.564 kb on + strand, within MIT1002_00718 at 785.709 kb on + strand, within MIT1002_00718 at 785.724 kb on + strand, within MIT1002_00718 at 785.739 kb on - strand, within MIT1002_00718 at 785.778 kb on + strand, within MIT1002_00718 at 785.817 kb on - strand, within MIT1002_00718 at 785.833 kb on + strand, within MIT1002_00718 at 785.833 kb on + strand, within MIT1002_00718 at 785.833 kb on + strand, within MIT1002_00718 at 785.845 kb on + strand, within MIT1002_00718 at 785.859 kb on + strand, within MIT1002_00718 at 785.968 kb on + strand, within MIT1002_00718 at 785.977 kb on + strand, within MIT1002_00718 at 785.987 kb on + strand, within MIT1002_00718 at 785.995 kb on - strand, within MIT1002_00718 at 786.011 kb on + strand, within MIT1002_00718 at 786.019 kb on - strand, within MIT1002_00718 at 786.064 kb on + strand, within MIT1002_00718 at 786.064 kb on + strand, within MIT1002_00718 at 786.064 kb on + strand, within MIT1002_00718 at 786.064 kb on - strand, within MIT1002_00718 at 786.064 kb on - strand, within MIT1002_00718 at 786.071 kb on - strand, within MIT1002_00718 at 786.077 kb on + strand, within MIT1002_00718 at 786.079 kb on + strand, within MIT1002_00718 at 786.079 kb on - strand, within MIT1002_00718 at 786.081 kb on - strand, within MIT1002_00718 at 786.087 kb on - strand, within MIT1002_00718 at 786.095 kb on - strand, within MIT1002_00718 at 786.101 kb on - strand, within MIT1002_00718 at 786.245 kb on + strand, within MIT1002_00718 at 786.303 kb on - strand at 786.308 kb on + strand at 786.326 kb on - strand at 786.456 kb on - strand at 786.480 kb on + strand at 786.482 kb on + strand at 786.482 kb on + strand at 786.497 kb on + strand, within MIT1002_00719 at 786.506 kb on - strand, within MIT1002_00719 at 786.561 kb on + strand, within MIT1002_00719 at 786.566 kb on + strand, within MIT1002_00719 at 786.574 kb on - strand, within MIT1002_00719 at 786.580 kb on + strand, within MIT1002_00719 at 786.588 kb on - strand, within MIT1002_00719 at 786.588 kb on - strand, within MIT1002_00719 at 786.734 kb on - strand, within MIT1002_00719 at 786.807 kb on - strand, within MIT1002_00719 at 786.807 kb on - strand, within MIT1002_00719 at 786.824 kb on - strand, within MIT1002_00719 at 786.825 kb on - strand, within MIT1002_00719 at 786.864 kb on - strand, within MIT1002_00719 at 787.003 kb on + strand, within MIT1002_00719 at 787.003 kb on + strand, within MIT1002_00719 at 787.003 kb on + strand, within MIT1002_00719 at 787.011 kb on - strand, within MIT1002_00719 at 787.011 kb on - strand, within MIT1002_00719 at 787.011 kb on - strand, within MIT1002_00719 at 787.055 kb on - strand, within MIT1002_00719 at 787.084 kb on - strand, within MIT1002_00719 at 787.100 kb on - strand, within MIT1002_00719 at 787.100 kb on - strand, within MIT1002_00719 at 787.129 kb on - strand, within MIT1002_00719 at 787.247 kb on + strand, within MIT1002_00719 at 787.247 kb on + strand, within MIT1002_00719 at 787.254 kb on + strand, within MIT1002_00719 at 787.255 kb on - strand, within MIT1002_00719 at 787.269 kb on + strand, within MIT1002_00719 at 787.438 kb on - strand, within MIT1002_00719 at 787.594 kb on - strand, within MIT1002_00719 at 787.652 kb on + strand at 787.662 kb on - strand at 787.665 kb on + strand at 787.712 kb on - strand at 787.721 kb on + strand at 787.729 kb on - strand at 787.729 kb on - strand at 787.729 kb on - strand at 787.749 kb on + strand at 787.755 kb on - strand at 787.790 kb on - strand at 787.818 kb on + strand at 787.818 kb on + strand at 787.818 kb on + strand at 787.818 kb on + strand at 787.818 kb on + strand at 787.824 kb on - strand at 787.842 kb on + strand at 787.944 kb on + strand at 787.946 kb on + strand at 788.049 kb on - strand at 788.182 kb on + strand at 788.316 kb on + strand, within MIT1002_00720 at 788.324 kb on - strand, within MIT1002_00720 at 788.331 kb on + strand, within MIT1002_00720 at 788.345 kb on - strand, within MIT1002_00720 at 788.412 kb on - strand, within MIT1002_00720 at 788.447 kb on + strand, within MIT1002_00720 at 788.452 kb on - strand, within MIT1002_00720 at 788.455 kb on - strand, within MIT1002_00720 at 788.528 kb on - strand, within MIT1002_00720 at 788.530 kb on - strand, within MIT1002_00720 at 788.588 kb on + strand, within MIT1002_00720 at 788.598 kb on + strand at 788.635 kb on + strand at 788.643 kb on - strand at 788.655 kb on + strand at 788.718 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 785,394 + +0.6 785,394 + -3.3 785,402 - -3.6 785,409 + +1.7 785,451 + +1.5 785,471 - MIT1002_00718 0.10 +0.3 785,500 - MIT1002_00718 0.13 +0.7 785,526 - MIT1002_00718 0.16 +0.6 785,538 - MIT1002_00718 0.17 +2.9 785,548 + MIT1002_00718 0.18 +0.0 785,564 + MIT1002_00718 0.20 -0.7 785,709 + MIT1002_00718 0.34 +0.5 785,724 + MIT1002_00718 0.36 +0.3 785,739 - MIT1002_00718 0.38 -0.5 785,778 + MIT1002_00718 0.41 +1.0 785,817 - MIT1002_00718 0.45 -0.2 785,833 + MIT1002_00718 0.47 +0.9 785,833 + MIT1002_00718 0.47 +1.2 785,833 + MIT1002_00718 0.47 +0.3 785,845 + MIT1002_00718 0.48 +1.2 785,859 + MIT1002_00718 0.50 -1.6 785,968 + MIT1002_00718 0.61 +1.3 785,977 + MIT1002_00718 0.62 -1.8 785,987 + MIT1002_00718 0.63 +0.4 785,995 - MIT1002_00718 0.64 -0.4 786,011 + MIT1002_00718 0.65 +0.3 786,019 - MIT1002_00718 0.66 -0.2 786,064 + MIT1002_00718 0.71 -1.7 786,064 + MIT1002_00718 0.71 -0.1 786,064 + MIT1002_00718 0.71 +1.5 786,064 - MIT1002_00718 0.71 -0.1 786,064 - MIT1002_00718 0.71 -0.2 786,071 - MIT1002_00718 0.71 -1.5 786,077 + MIT1002_00718 0.72 +0.0 786,079 + MIT1002_00718 0.72 +1.0 786,079 - MIT1002_00718 0.72 -0.6 786,081 - MIT1002_00718 0.72 -0.6 786,087 - MIT1002_00718 0.73 -1.1 786,095 - MIT1002_00718 0.74 +0.0 786,101 - MIT1002_00718 0.74 -0.2 786,245 + MIT1002_00718 0.89 -1.3 786,303 - +0.6 786,308 + +0.0 786,326 - -1.1 786,456 - -1.0 786,480 + -2.0 786,482 + -2.6 786,482 + -3.1 786,497 + MIT1002_00719 0.10 -3.2 786,506 - MIT1002_00719 0.11 -0.8 786,561 + MIT1002_00719 0.15 -1.8 786,566 + MIT1002_00719 0.15 -3.3 786,574 - MIT1002_00719 0.16 -2.4 786,580 + MIT1002_00719 0.16 -2.6 786,588 - MIT1002_00719 0.17 +0.0 786,588 - MIT1002_00719 0.17 -1.4 786,734 - MIT1002_00719 0.27 -3.1 786,807 - MIT1002_00719 0.32 -1.1 786,807 - MIT1002_00719 0.32 -1.9 786,824 - MIT1002_00719 0.33 -2.7 786,825 - MIT1002_00719 0.33 -2.5 786,864 - MIT1002_00719 0.36 +0.0 787,003 + MIT1002_00719 0.46 -3.0 787,003 + MIT1002_00719 0.46 -2.6 787,003 + MIT1002_00719 0.46 -2.1 787,011 - MIT1002_00719 0.46 -0.8 787,011 - MIT1002_00719 0.46 -0.6 787,011 - MIT1002_00719 0.46 +0.0 787,055 - MIT1002_00719 0.49 -1.0 787,084 - MIT1002_00719 0.51 -2.0 787,100 - MIT1002_00719 0.52 -1.9 787,100 - MIT1002_00719 0.52 -2.7 787,129 - MIT1002_00719 0.54 -0.3 787,247 + MIT1002_00719 0.63 -1.3 787,247 + MIT1002_00719 0.63 -1.8 787,254 + MIT1002_00719 0.63 -2.4 787,255 - MIT1002_00719 0.63 -1.4 787,269 + MIT1002_00719 0.64 -2.3 787,438 - MIT1002_00719 0.76 -0.8 787,594 - MIT1002_00719 0.87 -1.4 787,652 + -2.7 787,662 - -1.9 787,665 + -3.0 787,712 - +0.4 787,721 + +0.0 787,729 - -1.4 787,729 - -2.8 787,729 - -1.0 787,749 + -2.1 787,755 - -1.4 787,790 - -1.2 787,818 + -2.1 787,818 + -0.7 787,818 + +1.9 787,818 + -0.5 787,818 + +0.1 787,824 - +0.0 787,842 + -3.7 787,944 + -1.8 787,946 + -1.0 788,049 - +0.0 788,182 + +0.7 788,316 + MIT1002_00720 0.15 -1.0 788,324 - MIT1002_00720 0.17 -2.8 788,331 + MIT1002_00720 0.19 +1.2 788,345 - MIT1002_00720 0.23 +0.3 788,412 - MIT1002_00720 0.41 +1.2 788,447 + MIT1002_00720 0.50 +1.0 788,452 - MIT1002_00720 0.52 +0.1 788,455 - MIT1002_00720 0.52 +3.8 788,528 - MIT1002_00720 0.72 -0.9 788,530 - MIT1002_00720 0.73 -0.2 788,588 + MIT1002_00720 0.88 +0.1 788,598 + -1.3 788,635 + +0.7 788,643 - +1.5 788,655 + +0.2 788,718 + -0.6
Or see this region's nucleotide sequence