Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00660

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00659 and MIT1002_00660 are separated by 108 nucleotidesMIT1002_00660 and MIT1002_00661 are separated by 521 nucleotides MIT1002_00659: MIT1002_00659 - RNA polymerase-associated protein RapA, at 715,619 to 718,480 _00659 MIT1002_00660: MIT1002_00660 - hypothetical protein, at 718,589 to 719,983 _00660 MIT1002_00661: MIT1002_00661 - Phosphate starvation-inducible protein PsiH, at 720,505 to 721,902 _00661 Position (kb) 718 719 720Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 717.592 kb on - strand, within MIT1002_00659at 717.592 kb on - strand, within MIT1002_00659at 717.619 kb on - strand, within MIT1002_00659at 717.726 kb on - strand, within MIT1002_00659at 717.745 kb on - strand, within MIT1002_00659at 717.752 kb on + strand, within MIT1002_00659at 717.755 kb on + strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.890 kb on - strand, within MIT1002_00659at 717.979 kb on + strand, within MIT1002_00659at 718.014 kb on - strand, within MIT1002_00659at 718.041 kb on - strand, within MIT1002_00659at 718.099 kb on + strand, within MIT1002_00659at 718.106 kb on - strand, within MIT1002_00659at 718.106 kb on - strand, within MIT1002_00659at 718.107 kb on - strand, within MIT1002_00659at 718.107 kb on - strand, within MIT1002_00659at 718.180 kb on - strand, within MIT1002_00659at 718.221 kb on - strandat 718.373 kb on - strandat 718.375 kb on - strandat 718.408 kb on + strandat 718.408 kb on + strandat 718.410 kb on + strandat 718.436 kb on + strandat 718.509 kb on + strandat 718.519 kb on - strandat 718.547 kb on + strandat 718.585 kb on - strandat 718.596 kb on + strandat 718.604 kb on - strandat 718.655 kb on + strandat 718.688 kb on - strandat 718.698 kb on - strandat 718.708 kb on - strandat 718.709 kb on - strandat 718.767 kb on + strand, within MIT1002_00660at 718.823 kb on + strand, within MIT1002_00660at 718.908 kb on + strand, within MIT1002_00660at 718.911 kb on - strand, within MIT1002_00660at 718.911 kb on - strand, within MIT1002_00660at 718.911 kb on - strand, within MIT1002_00660at 718.911 kb on - strand, within MIT1002_00660at 718.913 kb on + strand, within MIT1002_00660at 719.015 kb on - strand, within MIT1002_00660at 719.021 kb on + strand, within MIT1002_00660at 719.024 kb on - strand, within MIT1002_00660at 719.050 kb on + strand, within MIT1002_00660at 719.063 kb on - strand, within MIT1002_00660at 719.128 kb on - strand, within MIT1002_00660at 719.137 kb on + strand, within MIT1002_00660at 719.187 kb on - strand, within MIT1002_00660at 719.189 kb on + strand, within MIT1002_00660at 719.190 kb on - strand, within MIT1002_00660at 719.197 kb on - strand, within MIT1002_00660at 719.322 kb on - strand, within MIT1002_00660at 719.364 kb on + strand, within MIT1002_00660at 719.387 kb on + strand, within MIT1002_00660at 719.418 kb on + strand, within MIT1002_00660at 719.418 kb on + strand, within MIT1002_00660at 719.450 kb on + strand, within MIT1002_00660at 719.514 kb on + strand, within MIT1002_00660at 719.514 kb on + strand, within MIT1002_00660at 719.522 kb on - strand, within MIT1002_00660at 719.532 kb on + strand, within MIT1002_00660at 719.594 kb on + strand, within MIT1002_00660at 719.608 kb on + strand, within MIT1002_00660at 719.648 kb on + strand, within MIT1002_00660at 719.656 kb on - strand, within MIT1002_00660at 719.673 kb on + strand, within MIT1002_00660at 719.673 kb on + strand, within MIT1002_00660at 719.717 kb on + strand, within MIT1002_00660at 719.725 kb on - strand, within MIT1002_00660at 719.725 kb on - strand, within MIT1002_00660at 719.796 kb on - strand, within MIT1002_00660at 719.852 kb on - strandat 719.852 kb on - strandat 719.857 kb on + strandat 719.865 kb on + strandat 719.866 kb on + strandat 719.871 kb on + strandat 719.910 kb on + strandat 719.936 kb on + strandat 719.978 kb on + strandat 720.048 kb on + strandat 720.082 kb on + strandat 720.090 kb on - strandat 720.242 kb on - strandat 720.290 kb on - strandat 720.313 kb on + strandat 720.358 kb on + strandat 720.358 kb on + strandat 720.361 kb on - strandat 720.366 kb on - strandat 720.366 kb on - strandat 720.366 kb on - strandat 720.366 kb on - strandat 720.366 kb on - strandat 720.587 kb on + strandat 720.595 kb on - strandat 720.623 kb on + strandat 720.649 kb on - strand, within MIT1002_00661at 720.682 kb on - strand, within MIT1002_00661at 720.724 kb on - strand, within MIT1002_00661at 720.766 kb on - strand, within MIT1002_00661at 720.789 kb on - strand, within MIT1002_00661at 720.821 kb on - strand, within MIT1002_00661at 720.827 kb on - strand, within MIT1002_00661at 720.888 kb on + strand, within MIT1002_00661at 720.931 kb on + strand, within MIT1002_00661at 720.959 kb on + strand, within MIT1002_00661at 720.964 kb on + strand, within MIT1002_00661

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
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717,592 - MIT1002_00659 0.69 -1.3
717,592 - MIT1002_00659 0.69 -1.7
717,619 - MIT1002_00659 0.70 +1.5
717,726 - MIT1002_00659 0.74 -0.8
717,745 - MIT1002_00659 0.74 -1.0
717,752 + MIT1002_00659 0.75 -2.6
717,755 + MIT1002_00659 0.75 -0.8
717,890 - MIT1002_00659 0.79 -0.2
717,890 - MIT1002_00659 0.79 +1.7
717,890 - MIT1002_00659 0.79 -0.5
717,890 - MIT1002_00659 0.79 +0.3
717,890 - MIT1002_00659 0.79 +0.5
717,890 - MIT1002_00659 0.79 -0.7
717,979 + MIT1002_00659 0.82 +0.4
718,014 - MIT1002_00659 0.84 +0.8
718,041 - MIT1002_00659 0.85 +0.4
718,099 + MIT1002_00659 0.87 +0.1
718,106 - MIT1002_00659 0.87 -0.4
718,106 - MIT1002_00659 0.87 -0.6
718,107 - MIT1002_00659 0.87 -0.6
718,107 - MIT1002_00659 0.87 -0.7
718,180 - MIT1002_00659 0.89 +0.5
718,221 - +2.4
718,373 - -2.0
718,375 - -1.5
718,408 + +0.8
718,408 + -0.9
718,410 + +0.0
718,436 + +1.1
718,509 + +1.2
718,519 - +0.1
718,547 + +1.8
718,585 - -2.5
718,596 + +1.5
718,604 - -0.4
718,655 + -0.7
718,688 - +0.1
718,698 - -0.7
718,708 - -0.6
718,709 - -0.1
718,767 + MIT1002_00660 0.13 +0.9
718,823 + MIT1002_00660 0.17 +0.1
718,908 + MIT1002_00660 0.23 -0.1
718,911 - MIT1002_00660 0.23 +0.3
718,911 - MIT1002_00660 0.23 +0.2
718,911 - MIT1002_00660 0.23 -1.2
718,911 - MIT1002_00660 0.23 +0.1
718,913 + MIT1002_00660 0.23 +0.7
719,015 - MIT1002_00660 0.31 +0.4
719,021 + MIT1002_00660 0.31 +2.7
719,024 - MIT1002_00660 0.31 -3.2
719,050 + MIT1002_00660 0.33 -1.4
719,063 - MIT1002_00660 0.34 +0.0
719,128 - MIT1002_00660 0.39 -0.1
719,137 + MIT1002_00660 0.39 -2.1
719,187 - MIT1002_00660 0.43 -2.0
719,189 + MIT1002_00660 0.43 -1.5
719,190 - MIT1002_00660 0.43 -1.7
719,197 - MIT1002_00660 0.44 -1.0
719,322 - MIT1002_00660 0.53 +1.6
719,364 + MIT1002_00660 0.56 +0.9
719,387 + MIT1002_00660 0.57 +1.7
719,418 + MIT1002_00660 0.59 +1.2
719,418 + MIT1002_00660 0.59 -0.4
719,450 + MIT1002_00660 0.62 +0.0
719,514 + MIT1002_00660 0.66 +0.9
719,514 + MIT1002_00660 0.66 -1.6
719,522 - MIT1002_00660 0.67 +1.9
719,532 + MIT1002_00660 0.68 -1.6
719,594 + MIT1002_00660 0.72 -0.3
719,608 + MIT1002_00660 0.73 -2.0
719,648 + MIT1002_00660 0.76 -0.8
719,656 - MIT1002_00660 0.76 -2.2
719,673 + MIT1002_00660 0.78 -0.3
719,673 + MIT1002_00660 0.78 -0.8
719,717 + MIT1002_00660 0.81 -0.4
719,725 - MIT1002_00660 0.81 -0.2
719,725 - MIT1002_00660 0.81 +1.6
719,796 - MIT1002_00660 0.87 +0.4
719,852 - -1.3
719,852 - +1.0
719,857 + +0.3
719,865 + +1.1
719,866 + -0.2
719,871 + -0.1
719,910 + -0.2
719,936 + -0.4
719,978 + -0.9
720,048 + +3.0
720,082 + +0.2
720,090 - -0.5
720,242 - +0.6
720,290 - -0.2
720,313 + +0.4
720,358 + +0.1
720,358 + -0.2
720,361 - -0.2
720,366 - +0.3
720,366 - +0.8
720,366 - +0.3
720,366 - -2.4
720,366 - +0.8
720,587 + +0.5
720,595 - +0.2
720,623 + +0.4
720,649 - MIT1002_00661 0.10 +0.9
720,682 - MIT1002_00661 0.13 -0.5
720,724 - MIT1002_00661 0.16 +0.0
720,766 - MIT1002_00661 0.19 -2.2
720,789 - MIT1002_00661 0.20 +1.3
720,821 - MIT1002_00661 0.23 +0.4
720,827 - MIT1002_00661 0.23 +0.7
720,888 + MIT1002_00661 0.27 -0.3
720,931 + MIT1002_00661 0.30 -0.5
720,959 + MIT1002_00661 0.32 -0.6
720,964 + MIT1002_00661 0.33 -0.3

Or see this region's nucleotide sequence