Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00536 and MIT1002_00537 are separated by 77 nucleotides MIT1002_00537 and MIT1002_00538 are separated by 100 nucleotides MIT1002_00538 and MIT1002_00539 are separated by 76 nucleotides
MIT1002_00536: MIT1002_00536 - putative iron-regulated membrane protein, at 583,042 to 583,761
_00536
MIT1002_00537: MIT1002_00537 - NYN domain protein, at 583,839 to 584,309
_00537
MIT1002_00538: MIT1002_00538 - Gamma-glutamyltranspeptidase precursor, at 584,410 to 586,128
_00538
MIT1002_00539: MIT1002_00539 - Malate-2H(+)/Na(+)-lactate antiporter, at 586,205 to 587,581
_00539
Position (kb) 584
585
586
587 Strain fitness (log2 ratio) -7
-6
-5
-4
-3
-2
-1
0
1
2
3 at 583.410 kb on + strand, within MIT1002_00536 at 583.502 kb on + strand, within MIT1002_00536 at 583.522 kb on - strand, within MIT1002_00536 at 583.570 kb on - strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.596 kb on + strand, within MIT1002_00536 at 583.603 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.604 kb on - strand, within MIT1002_00536 at 583.629 kb on + strand, within MIT1002_00536 at 583.683 kb on - strand, within MIT1002_00536 at 583.693 kb on - strand at 583.693 kb on - strand at 583.701 kb on - strand at 583.716 kb on + strand at 583.724 kb on - strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.732 kb on + strand at 583.856 kb on - strand at 583.885 kb on - strand at 583.885 kb on - strand at 583.896 kb on - strand, within MIT1002_00537 at 583.985 kb on - strand, within MIT1002_00537 at 584.055 kb on - strand, within MIT1002_00537 at 584.056 kb on - strand, within MIT1002_00537 at 584.070 kb on + strand, within MIT1002_00537 at 584.110 kb on - strand, within MIT1002_00537 at 584.119 kb on + strand, within MIT1002_00537 at 584.126 kb on - strand, within MIT1002_00537 at 584.137 kb on + strand, within MIT1002_00537 at 584.184 kb on + strand, within MIT1002_00537 at 584.222 kb on + strand, within MIT1002_00537 at 584.231 kb on - strand, within MIT1002_00537 at 584.335 kb on - strand at 584.388 kb on + strand at 584.401 kb on - strand at 584.401 kb on - strand at 584.401 kb on - strand at 584.407 kb on + strand at 584.428 kb on + strand at 584.436 kb on - strand at 584.530 kb on - strand at 584.530 kb on - strand at 584.535 kb on - strand at 584.542 kb on - strand at 584.567 kb on - strand at 584.621 kb on + strand, within MIT1002_00538 at 584.623 kb on + strand, within MIT1002_00538 at 584.631 kb on - strand, within MIT1002_00538 at 584.631 kb on - strand, within MIT1002_00538 at 584.631 kb on - strand, within MIT1002_00538 at 584.662 kb on + strand, within MIT1002_00538 at 584.751 kb on + strand, within MIT1002_00538 at 584.751 kb on + strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.759 kb on - strand, within MIT1002_00538 at 584.787 kb on + strand, within MIT1002_00538 at 584.795 kb on - strand, within MIT1002_00538 at 584.814 kb on - strand, within MIT1002_00538 at 584.817 kb on + strand, within MIT1002_00538 at 584.890 kb on + strand, within MIT1002_00538 at 584.890 kb on + strand, within MIT1002_00538 at 584.898 kb on - strand, within MIT1002_00538 at 584.911 kb on - strand, within MIT1002_00538 at 584.921 kb on - strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.945 kb on + strand, within MIT1002_00538 at 584.954 kb on + strand, within MIT1002_00538 at 584.959 kb on + strand, within MIT1002_00538 at 584.976 kb on + strand, within MIT1002_00538 at 585.062 kb on + strand, within MIT1002_00538 at 585.119 kb on + strand, within MIT1002_00538 at 585.121 kb on + strand, within MIT1002_00538 at 585.129 kb on - strand, within MIT1002_00538 at 585.143 kb on + strand, within MIT1002_00538 at 585.185 kb on + strand, within MIT1002_00538 at 585.208 kb on - strand, within MIT1002_00538 at 585.252 kb on + strand, within MIT1002_00538 at 585.266 kb on - strand, within MIT1002_00538 at 585.276 kb on - strand, within MIT1002_00538 at 585.291 kb on + strand, within MIT1002_00538 at 585.291 kb on + strand, within MIT1002_00538 at 585.291 kb on + strand, within MIT1002_00538 at 585.299 kb on - strand, within MIT1002_00538 at 585.299 kb on - strand, within MIT1002_00538 at 585.299 kb on - strand, within MIT1002_00538 at 585.328 kb on + strand, within MIT1002_00538 at 585.374 kb on + strand, within MIT1002_00538 at 585.431 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.497 kb on + strand, within MIT1002_00538 at 585.505 kb on - strand, within MIT1002_00538 at 585.505 kb on - strand, within MIT1002_00538 at 585.597 kb on + strand, within MIT1002_00538 at 585.605 kb on - strand, within MIT1002_00538 at 585.637 kb on - strand, within MIT1002_00538 at 585.882 kb on + strand, within MIT1002_00538 at 585.982 kb on - strand at 585.993 kb on - strand at 586.010 kb on + strand at 586.050 kb on + strand at 586.103 kb on - strand at 586.152 kb on + strand at 586.153 kb on + strand at 586.212 kb on + strand at 586.350 kb on + strand, within MIT1002_00539 at 586.366 kb on - strand, within MIT1002_00539 at 586.409 kb on + strand, within MIT1002_00539 at 586.422 kb on - strand, within MIT1002_00539 at 586.422 kb on - strand, within MIT1002_00539 at 586.576 kb on - strand, within MIT1002_00539 at 586.576 kb on - strand, within MIT1002_00539 at 586.586 kb on - strand, within MIT1002_00539 at 586.588 kb on + strand, within MIT1002_00539 at 586.588 kb on + strand, within MIT1002_00539 at 586.588 kb on + strand, within MIT1002_00539 at 586.588 kb on + strand, within MIT1002_00539 at 586.596 kb on - strand, within MIT1002_00539 at 586.596 kb on - strand, within MIT1002_00539 at 586.596 kb on - strand, within MIT1002_00539 at 586.616 kb on + strand, within MIT1002_00539 at 586.696 kb on - strand, within MIT1002_00539 at 586.722 kb on - strand, within MIT1002_00539 at 586.733 kb on + strand, within MIT1002_00539 at 586.733 kb on + strand, within MIT1002_00539 at 586.733 kb on + strand, within MIT1002_00539 at 586.733 kb on + strand, within MIT1002_00539 at 586.741 kb on - strand, within MIT1002_00539 at 586.797 kb on + strand, within MIT1002_00539 at 586.809 kb on + strand, within MIT1002_00539 at 586.894 kb on + strand, within MIT1002_00539 at 586.898 kb on - strand, within MIT1002_00539 at 586.931 kb on + strand, within MIT1002_00539 at 586.931 kb on + strand, within MIT1002_00539 at 586.931 kb on + strand, within MIT1002_00539 at 586.956 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.976 kb on + strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 586.984 kb on - strand, within MIT1002_00539 at 587.065 kb on + strand, within MIT1002_00539 at 587.079 kb on - strand, within MIT1002_00539 at 587.082 kb on - strand, within MIT1002_00539
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment B, time point 4 remove 583,410 + MIT1002_00536 0.51 -0.6 583,502 + MIT1002_00536 0.64 -0.8 583,522 - MIT1002_00536 0.67 +1.0 583,570 - MIT1002_00536 0.73 +0.0 583,596 + MIT1002_00536 0.77 -0.2 583,596 + MIT1002_00536 0.77 -1.7 583,596 + MIT1002_00536 0.77 +0.1 583,596 + MIT1002_00536 0.77 -0.2 583,596 + MIT1002_00536 0.77 -2.4 583,603 - MIT1002_00536 0.78 -1.0 583,604 - MIT1002_00536 0.78 +0.3 583,604 - MIT1002_00536 0.78 +1.1 583,604 - MIT1002_00536 0.78 +0.0 583,629 + MIT1002_00536 0.82 -0.8 583,683 - MIT1002_00536 0.89 -6.8 583,693 - +0.1 583,693 - +0.2 583,701 - +0.0 583,716 + -3.7 583,724 - +3.5 583,732 + -0.2 583,732 + +0.5 583,732 + +2.4 583,732 + -0.2 583,856 - +0.4 583,885 - +2.0 583,885 - +1.8 583,896 - MIT1002_00537 0.12 -1.9 583,985 - MIT1002_00537 0.31 +0.9 584,055 - MIT1002_00537 0.46 -0.3 584,056 - MIT1002_00537 0.46 +0.2 584,070 + MIT1002_00537 0.49 +0.7 584,110 - MIT1002_00537 0.58 +1.2 584,119 + MIT1002_00537 0.59 +0.5 584,126 - MIT1002_00537 0.61 +0.4 584,137 + MIT1002_00537 0.63 +0.0 584,184 + MIT1002_00537 0.73 -1.2 584,222 + MIT1002_00537 0.81 -0.4 584,231 - MIT1002_00537 0.83 -0.2 584,335 - +0.8 584,388 + +0.1 584,401 - +0.2 584,401 - -2.5 584,401 - +2.8 584,407 + -0.2 584,428 + +1.6 584,436 - -0.2 584,530 - +0.3 584,530 - -0.3 584,535 - +1.0 584,542 - -0.4 584,567 - +0.9 584,621 + MIT1002_00538 0.12 -2.7 584,623 + MIT1002_00538 0.12 -1.6 584,631 - MIT1002_00538 0.13 -0.3 584,631 - MIT1002_00538 0.13 +1.6 584,631 - MIT1002_00538 0.13 -0.8 584,662 + MIT1002_00538 0.15 +0.3 584,751 + MIT1002_00538 0.20 +0.1 584,751 + MIT1002_00538 0.20 +1.1 584,759 - MIT1002_00538 0.20 -1.2 584,759 - MIT1002_00538 0.20 +1.2 584,759 - MIT1002_00538 0.20 -1.4 584,759 - MIT1002_00538 0.20 -0.0 584,787 + MIT1002_00538 0.22 -0.3 584,795 - MIT1002_00538 0.22 -1.1 584,814 - MIT1002_00538 0.24 -1.2 584,817 + MIT1002_00538 0.24 -1.7 584,890 + MIT1002_00538 0.28 +0.0 584,890 + MIT1002_00538 0.28 -0.5 584,898 - MIT1002_00538 0.28 -1.3 584,911 - MIT1002_00538 0.29 -0.6 584,921 - MIT1002_00538 0.30 -2.1 584,945 + MIT1002_00538 0.31 +0.1 584,945 + MIT1002_00538 0.31 -0.2 584,945 + MIT1002_00538 0.31 -0.0 584,945 + MIT1002_00538 0.31 -0.2 584,954 + MIT1002_00538 0.32 +0.4 584,959 + MIT1002_00538 0.32 -0.6 584,976 + MIT1002_00538 0.33 +0.9 585,062 + MIT1002_00538 0.38 +0.6 585,119 + MIT1002_00538 0.41 -1.9 585,121 + MIT1002_00538 0.41 +1.0 585,129 - MIT1002_00538 0.42 -0.1 585,143 + MIT1002_00538 0.43 -0.2 585,185 + MIT1002_00538 0.45 -0.8 585,208 - MIT1002_00538 0.46 -0.6 585,252 + MIT1002_00538 0.49 -1.0 585,266 - MIT1002_00538 0.50 +0.0 585,276 - MIT1002_00538 0.50 -3.1 585,291 + MIT1002_00538 0.51 -0.6 585,291 + MIT1002_00538 0.51 +0.3 585,291 + MIT1002_00538 0.51 -0.6 585,299 - MIT1002_00538 0.52 +0.0 585,299 - MIT1002_00538 0.52 +0.5 585,299 - MIT1002_00538 0.52 -0.2 585,328 + MIT1002_00538 0.53 +0.2 585,374 + MIT1002_00538 0.56 +0.7 585,431 + MIT1002_00538 0.59 +1.2 585,497 + MIT1002_00538 0.63 -0.3 585,497 + MIT1002_00538 0.63 -1.1 585,497 + MIT1002_00538 0.63 +0.8 585,497 + MIT1002_00538 0.63 -0.4 585,497 + MIT1002_00538 0.63 +1.5 585,497 + MIT1002_00538 0.63 +0.3 585,505 - MIT1002_00538 0.64 -1.9 585,505 - MIT1002_00538 0.64 -0.2 585,597 + MIT1002_00538 0.69 -0.7 585,605 - MIT1002_00538 0.70 -0.2 585,637 - MIT1002_00538 0.71 +1.2 585,882 + MIT1002_00538 0.86 +0.1 585,982 - +0.3 585,993 - +1.0 586,010 + -0.1 586,050 + -0.2 586,103 - +0.8 586,152 + +0.8 586,153 + -0.1 586,212 + +0.8 586,350 + MIT1002_00539 0.11 +0.2 586,366 - MIT1002_00539 0.12 +0.8 586,409 + MIT1002_00539 0.15 -0.1 586,422 - MIT1002_00539 0.16 +0.5 586,422 - MIT1002_00539 0.16 -0.1 586,576 - MIT1002_00539 0.27 -0.1 586,576 - MIT1002_00539 0.27 +1.5 586,586 - MIT1002_00539 0.28 +0.8 586,588 + MIT1002_00539 0.28 +2.6 586,588 + MIT1002_00539 0.28 +1.3 586,588 + MIT1002_00539 0.28 -1.0 586,588 + MIT1002_00539 0.28 +1.2 586,596 - MIT1002_00539 0.28 +0.2 586,596 - MIT1002_00539 0.28 -0.4 586,596 - MIT1002_00539 0.28 -0.3 586,616 + MIT1002_00539 0.30 -0.3 586,696 - MIT1002_00539 0.36 -0.2 586,722 - MIT1002_00539 0.38 -0.0 586,733 + MIT1002_00539 0.38 +0.1 586,733 + MIT1002_00539 0.38 +0.0 586,733 + MIT1002_00539 0.38 -0.3 586,733 + MIT1002_00539 0.38 +0.8 586,741 - MIT1002_00539 0.39 -0.4 586,797 + MIT1002_00539 0.43 +1.4 586,809 + MIT1002_00539 0.44 +0.3 586,894 + MIT1002_00539 0.50 -0.4 586,898 - MIT1002_00539 0.50 +0.7 586,931 + MIT1002_00539 0.53 -0.6 586,931 + MIT1002_00539 0.53 -1.1 586,931 + MIT1002_00539 0.53 -0.2 586,956 + MIT1002_00539 0.55 +0.1 586,976 + MIT1002_00539 0.56 -1.9 586,976 + MIT1002_00539 0.56 +0.6 586,976 + MIT1002_00539 0.56 +0.2 586,976 + MIT1002_00539 0.56 +0.8 586,984 - MIT1002_00539 0.57 +2.0 586,984 - MIT1002_00539 0.57 -0.5 586,984 - MIT1002_00539 0.57 +2.0 586,984 - MIT1002_00539 0.57 -1.2 586,984 - MIT1002_00539 0.57 -0.2 587,065 + MIT1002_00539 0.62 +0.4 587,079 - MIT1002_00539 0.63 -0.7 587,082 - MIT1002_00539 0.64 -0.2
Or see this region's nucleotide sequence